Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P16
         (933 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   1.3  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   5.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   5.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   5.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.9  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 551 LEEYVKNSINYQIGKLIKAVNNATVYLDSLS 643
           L  + KN+    I KL+   NNA +Y  S++
Sbjct: 506 LINFSKNNTIVDISKLVNKRNNAKIYTSSVN 536


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 328 MHLWRLFAWENGSDRSEARQ-RIINTQFD 411
           +H W+ F ++ GSD  E RQ  I++ ++D
Sbjct: 34  LHEWKFFDYDFGSD--ERRQDAILSGEYD 60


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 328 MHLWRLFAWENGSDRSEARQ-RIINTQFD 411
           +H W+ F ++ GSD  E RQ  I++ ++D
Sbjct: 34  LHEWKFFDYDFGSD--ERRQDAILSGEYD 60


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 328 MHLWRLFAWENGSDRSEARQ-RIINTQFD 411
           +H W+ F ++ GSD  E RQ  I++ ++D
Sbjct: 34  LHEWKFFDYDFGSD--ERRQDAILSGEYD 60


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 449 SFWLFCTTSPPR 414
           SFWL    SPPR
Sbjct: 252 SFWLHMDASPPR 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,925
Number of Sequences: 438
Number of extensions: 4047
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)