Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P10
         (951 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   2.3  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   7.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   9.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   9.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 574 SPRRGRYPTPSRERERCPSHRPVPFARRSXTRARE 678
           SP   +  TP +ER+   + +PV  +R+   ++ E
Sbjct: 782 SPNSTKETTPKKERKTATTTQPVISSRKEQKKSEE 816


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 55  NFESSYRIVEAFKRTFLCVLPFLFKYNR 138
           N +SSY I  A    FL +L  L+ Y R
Sbjct: 193 NMDSSYVIFSAMGSFFLPMLVMLYVYGR 220


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 569 HHHRAEEGTRRRQGREKGAHRTDRSRSQGDQXPERGNP 682
           + ++ E    R   +E+  +RT+R RS+  +     NP
Sbjct: 50  YKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNP 87


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 593 TRRRQGREKGAHRTDRSRSQGDQXPERGNP 682
           T++ Q    GA     S  Q  Q P+RG+P
Sbjct: 10  TQQSQQPSSGAPGPQPSPHQSPQAPQRGSP 39


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 561 GVLTITAPRKVPDAVKGERKVPIAQTGPVRKEIXDQSE 674
           G  T T      D +  E  +PI +TG   K I ++ E
Sbjct: 141 GKSTTTTVEVKRDIINPEDVIPIRRTGEGSKPIFEREE 178


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 466 TSTGIFQGSSSDVTRCLKARRLRLWNRGC 552
           T   +F G  SD+      + L +W  GC
Sbjct: 241 TLVTMFTGLKSDIPPVAYVKALDVWMAGC 269


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 537 VESRLSSDGVLTITAPRKVPDAVKGERKVPIAQTGPVRKEIXDQSE 674
           +E R    G  TIT      D +  E  + I +TG   K I ++ E
Sbjct: 133 LEIRRDLPGKSTITTVEVKRDIINPEDVILIRRTGEGSKPIFEREE 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,411
Number of Sequences: 438
Number of extensions: 4312
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)