Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P07
         (931 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.0  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   5.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   5.2  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   5.2  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   5.2  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   5.2  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   5.2  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   5.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   5.2  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   5.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   5.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 424 ACICVRSDAETEVLLVTSSRRPDNW 498
           +CICVR  AE   +L  S++  ++W
Sbjct: 487 SCICVRFIAEHTKMLEDSTKVKEDW 511


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 424 ACICVRSDAETEVLLVTSSRRPDNW 498
           +CICVR  AE   +L  S++  ++W
Sbjct: 487 SCICVRFIAEHTKMLEDSTKVKEDW 511


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 673 PEWEDSRLMXXVLXRLLTHHQ 735
           PEW+D       +  LLTHH+
Sbjct: 749 PEWKDLAKKARSVNHLLTHHE 769


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 230 LCRTYPFSTIKLHNVHKKSNYNNN 159
           L   Y +S    +N +  +NYNNN
Sbjct: 85  LSNNYKYSNYNNYNNNYNNNYNNN 108


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 230 LCRTYPFSTIKLHNVHKKSNYNNN 159
           L   Y +S    +N +  +NYNNN
Sbjct: 85  LSNNYKYSNYNNYNNNYNNNYNNN 108


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 197 LHNVHKKSNYNNN 159
           +HN + K NYNNN
Sbjct: 89  IHNNNYKYNYNNN 101


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 197 LHNVHKKSNYNNN 159
           +HN + K NYNNN
Sbjct: 89  IHNNNYKYNYNNN 101


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 197 LHNVHKKSNYNNN 159
           +HN + K NYNNN
Sbjct: 90  IHNNNYKYNYNNN 102


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 197 LHNVHKKSNYNNN 159
           +HN + K NYNNN
Sbjct: 90  IHNNNYKYNYNNN 102


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 197 LHNVHKKSNYNNN 159
           +HN + K NYNNN
Sbjct: 90  IHNNNYKYNYNNN 102


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 197 LHNVHKKSNYNNN 159
           +HN + K NYNNN
Sbjct: 90  IHNNNYKYNYNNN 102


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 209 STIKLHNVHKKSNYNNN 159
           S++    +H  +NYNNN
Sbjct: 83  SSLSNKTIHNNNNYNNN 99


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 209 STIKLHNVHKKSNYNNN 159
           S++    +H  +NYNNN
Sbjct: 83  SSLSNKTIHNNNNYNNN 99


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 360 NGKGEA*FDKDI*RRGF*ATGGMYLRAFRCRNRGPAGDVFETAR 491
           NG+ EA + K + +          LRA+ C   G  GD+  T +
Sbjct: 46  NGEEEAYYRKHLLKDADGRVSCPVLRAYTCPICGACGDIAHTVK 89


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 209 STIKLHNVHKKSNYNNN 159
           S++    +H  +NYNNN
Sbjct: 316 SSLSNKTIHNNNNYNNN 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,408
Number of Sequences: 438
Number of extensions: 3823
Number of successful extensions: 30
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)