Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P06
         (937 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.56 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 605  VSXXPXPPPPPP 640
            VS  P PPPPPP
Sbjct: 1853 VSGSPEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 623  PPPPPPP 643
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 623  PPPPPPP 643
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 617  PXPPPPPP 640
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 617 PXPPPPPP 640
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 617 PXPPPPPPP 643
           P P PPPPP
Sbjct: 339 PKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 878 PPPTXPPPXPXPXSXP 925
           PP   PPP P   S P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 882 PPXXPPXXPXPXPXPL 929
           PP   P  P P P PL
Sbjct: 437 PPSSNPVSPVPSPDPL 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,145
Number of Sequences: 438
Number of extensions: 5942
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)