Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_P05
(980 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein. 111 4e-24
U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein. 111 4e-24
U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein. 111 4e-24
L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair prote... 111 4e-24
L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair prote... 111 4e-24
L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair prote... 111 4e-24
L47580-1|AAB59572.1| 810|Homo sapiens MSH2 protein. 111 4e-24
L47579-1|AAB59571.1| 534|Homo sapiens MSH2 protein. 111 4e-24
L47578-1|AAB59570.1| 486|Homo sapiens MSH2 protein. 111 4e-24
L47577-1|AAB59569.1| 428|Homo sapiens MSH2 protein. 111 4e-24
L47576-1|AAB59568.1| 410|Homo sapiens MSH2 protein. 111 4e-24
L47575-1|AAB59567.1| 341|Homo sapiens MSH2 protein. 111 4e-24
L47574-1|AAB59566.1| 287|Homo sapiens protein ( Homo sapiens mi... 111 4e-24
BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon c... 111 4e-24
AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon c... 111 4e-24
AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant ... 111 4e-24
AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant ... 111 4e-24
AC079775-2|AAY15096.1| 586|Homo sapiens unknown protein. 111 4e-24
DQ648894-1|ABG49489.1| 209|Homo sapiens MSH2-Ex3 isoform protein. 103 1e-21
BC146761-1|AAI46762.1| 1534|Homo sapiens slit homolog 1 (Drosoph... 31 8.5
AL512424-5|CAI14258.1| 1534|Homo sapiens slit homolog 1 (Drosoph... 31 8.5
AL512424-4|CAI14259.1| 1461|Homo sapiens slit homolog 1 (Drosoph... 31 8.5
AL442123-4|CAH70918.1| 1534|Homo sapiens slit homolog 1 (Drosoph... 31 8.5
AL442123-3|CAH70917.1| 1461|Homo sapiens slit homolog 1 (Drosoph... 31 8.5
AB017167-1|BAA35184.1| 1534|Homo sapiens Slit-1 protein protein. 31 8.5
AB011537-1|BAA32465.3| 1618|Homo sapiens MEGF4 protein. 31 8.5
>U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein.
Length = 887
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>L47580-1|AAB59572.1| 810|Homo sapiens MSH2 protein.
Length = 810
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>L47579-1|AAB59571.1| 534|Homo sapiens MSH2 protein.
Length = 534
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>L47578-1|AAB59570.1| 486|Homo sapiens MSH2 protein.
Length = 486
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>L47577-1|AAB59569.1| 428|Homo sapiens MSH2 protein.
Length = 428
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>L47576-1|AAB59568.1| 410|Homo sapiens MSH2 protein.
Length = 410
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>L47575-1|AAB59567.1| 341|Homo sapiens MSH2 protein.
Length = 341
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>L47574-1|AAB59566.1| 287|Homo sapiens protein ( Homo sapiens
mismatch repair protein (MSH2) mRNA, with a Q288stop
mutation. ).
Length = 287
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>AC079775-2|AAY15096.1| 586|Homo sapiens unknown protein.
Length = 586
Score = 111 bits (267), Expect = 4e-24
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +3
Query: 279 SLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSV 458
++QP L L+S + FV FF +P+KP TTVR+FDR D+Y+ HG DA AAREVF +
Sbjct: 2 AVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQ 61
Query: 459 ANIKRMG-VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
IK MG L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 62 GVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 121
Query: 627 XRXGG 641
G
Sbjct: 122 KASPG 126
>DQ648894-1|ABG49489.1| 209|Homo sapiens MSH2-Ex3 isoform protein.
Length = 209
Score = 103 bits (247), Expect = 1e-21
Identities = 56/113 (49%), Positives = 70/113 (61%), Gaps = 4/113 (3%)
Frame = +3
Query: 300 LNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVFSSVANIKRMG 479
L L+S + FV FF + +KP TTVR+FDR D+Y+ HG DA AAREVF + IK MG
Sbjct: 4 LQLESAAEVGFVRFFQGMQEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 63
Query: 480 -VDPNRLDYLVLSKGNFEILIKKLLLVRRYRVEIY---VADGSIKGCDWSLKY 626
L +VLSK NFE +K LLLVR+YRVE+Y + + K DW L Y
Sbjct: 64 PAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAY 116
>BC146761-1|AAI46762.1| 1534|Homo sapiens slit homolog 1 (Drosophila)
protein.
Length = 1534
Score = 30.7 bits (66), Expect = 8.5
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +3
Query: 270 RMSSLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVF 449
++SSL N+ Q ++ +N+L PP + S+HG D +T +F
Sbjct: 795 KISSLSNSSFTNMS--QLTTLILSYNALQCIPPLAFQGLRSLRLLSLHGNDISTLQEGIF 852
Query: 450 SSVANIKRMGVDPNRL 497
+ V ++ + + N L
Sbjct: 853 ADVTSLSHLAIGANPL 868
>AL512424-5|CAI14258.1| 1534|Homo sapiens slit homolog 1 (Drosophila)
protein.
Length = 1534
Score = 30.7 bits (66), Expect = 8.5
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +3
Query: 270 RMSSLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVF 449
++SSL N+ Q ++ +N+L PP + S+HG D +T +F
Sbjct: 795 KISSLSNSSFTNMS--QLTTLILSYNALQCIPPLAFQGLRSLRLLSLHGNDISTLQEGIF 852
Query: 450 SSVANIKRMGVDPNRL 497
+ V ++ + + N L
Sbjct: 853 ADVTSLSHLAIGANPL 868
>AL512424-4|CAI14259.1| 1461|Homo sapiens slit homolog 1 (Drosophila)
protein.
Length = 1461
Score = 30.7 bits (66), Expect = 8.5
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +3
Query: 270 RMSSLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVF 449
++SSL N+ Q ++ +N+L PP + S+HG D +T +F
Sbjct: 795 KISSLSNSSFTNMS--QLTTLILSYNALQCIPPLAFQGLRSLRLLSLHGNDISTLQEGIF 852
Query: 450 SSVANIKRMGVDPNRL 497
+ V ++ + + N L
Sbjct: 853 ADVTSLSHLAIGANPL 868
>AL442123-4|CAH70918.1| 1534|Homo sapiens slit homolog 1 (Drosophila)
protein.
Length = 1534
Score = 30.7 bits (66), Expect = 8.5
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +3
Query: 270 RMSSLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVF 449
++SSL N+ Q ++ +N+L PP + S+HG D +T +F
Sbjct: 795 KISSLSNSSFTNMS--QLTTLILSYNALQCIPPLAFQGLRSLRLLSLHGNDISTLQEGIF 852
Query: 450 SSVANIKRMGVDPNRL 497
+ V ++ + + N L
Sbjct: 853 ADVTSLSHLAIGANPL 868
>AL442123-3|CAH70917.1| 1461|Homo sapiens slit homolog 1 (Drosophila)
protein.
Length = 1461
Score = 30.7 bits (66), Expect = 8.5
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +3
Query: 270 RMSSLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVF 449
++SSL N+ Q ++ +N+L PP + S+HG D +T +F
Sbjct: 795 KISSLSNSSFTNMS--QLTTLILSYNALQCIPPLAFQGLRSLRLLSLHGNDISTLQEGIF 852
Query: 450 SSVANIKRMGVDPNRL 497
+ V ++ + + N L
Sbjct: 853 ADVTSLSHLAIGANPL 868
>AB017167-1|BAA35184.1| 1534|Homo sapiens Slit-1 protein protein.
Length = 1534
Score = 30.7 bits (66), Expect = 8.5
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +3
Query: 270 RMSSLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVF 449
++SSL N+ Q ++ +N+L PP + S+HG D +T +F
Sbjct: 795 KISSLSNSSFTNMS--QLTTLILSYNALQCIPPLAFQGLRSLRLLSLHGNDISTLQEGIF 852
Query: 450 SSVANIKRMGVDPNRL 497
+ V ++ + + N L
Sbjct: 853 ADVTSLSHLAIGANPL 868
>AB011537-1|BAA32465.3| 1618|Homo sapiens MEGF4 protein.
Length = 1618
Score = 30.7 bits (66), Expect = 8.5
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +3
Query: 270 RMSSLQPIHALNLDSVQQQAFVIFFNSLPDKPPTTVRVFDRNDYYSIHGIDATTAAREVF 449
++SSL N+ Q ++ +N+L PP + S+HG D +T +F
Sbjct: 879 KISSLSNSSFTNMS--QLTTLILSYNALQCIPPLAFQGLRSLRLLSLHGNDISTLQEGIF 936
Query: 450 SSVANIKRMGVDPNRL 497
+ V ++ + + N L
Sbjct: 937 ADVTSLSHLAIGANPL 952
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,601,506
Number of Sequences: 237096
Number of extensions: 1502575
Number of successful extensions: 3094
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3075
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 13102819592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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