Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P03
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   1.3  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   1.3  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   1.3  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.9  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 126 RNVEIKGKIRDYDKICKVAEEL 191
           RN E + K R Y+K+C   E+L
Sbjct: 8   RNREYRKKDRQYEKLCNEEEKL 29


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 126 RNVEIKGKIRDYDKICKVAEEL 191
           RN E + K R Y+K+C   E+L
Sbjct: 8   RNREYRKKDRQYEKLCNEEEKL 29


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 126 RNVEIKGKIRDYDKICKVAEEL 191
           RN E + K R Y+K+C   E+L
Sbjct: 8   RNREYRKKDRQYEKLCNEEEKL 29


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 126 RNVEIKGKIRDYDKICKVAEEL 191
           RN E + K R Y+K+C   E+L
Sbjct: 8   RNREYRKKDRQYEKLCNEEEKL 29


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 180  AEELSGGPPTLIKQNDI 230
            AEE   GPPT I+ +D+
Sbjct: 972  AEEAPSGPPTSIRVDDL 988


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 409 HFFNISSKSLAFSYSAVVNCNNS*F 335
           HFF++    +AF + +++N  N+ F
Sbjct: 245 HFFDLVRPLIAFKFHSILNRTNNIF 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,853
Number of Sequences: 438
Number of extensions: 4769
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)