Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P01
         (956 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              25   1.3  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    25   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   9.4  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 601 SKEYPA*MTTTVFNDPCHCCSE 536
           S+  P+  +TT F+  C+CC E
Sbjct: 75  SQVQPSVASTTGFSKECYCCRE 96


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 601 SKEYPA*MTTTVFNDPCHCCSE 536
           S+  P+  +TT F+  C+CC E
Sbjct: 75  SQVQPSVASTTGFSKECYCCRE 96


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 33  EFLKILIIIFDYGTPDNPSPAYPEP 107
           E+  + I++ D  TP  P+P  P P
Sbjct: 324 EYCLVNIVLGDSDTPPKPAPPPPPP 348


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = +2

Query: 410 SRDYSAYQIWDTAQAFCSTITGTLATQEVLRGVGVGDTTATPLAAT 547
           +RD S     D +     T TG   T       G G  T + + AT
Sbjct: 202 ARDESKAGSTDASTPATVTTTGATTTLPAASATGTGPATPSAVVAT 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,680
Number of Sequences: 438
Number of extensions: 4430
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31444140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)