Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M22
         (916 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.31 
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   6.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   8.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   8.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 407  TTTAQTYARLPFVVLQPSSAPRGPLKQKRLRQPQPSRNN 523
            TT A  YAR+  +     ++ + P  Q++  Q QPSRNN
Sbjct: 1267 TTGAAVYARV--IAPTTITSSQSPGNQQQTIQTQPSRNN 1303


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 343 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 471
           +RP  A +   L ++KR    N Y T+  +  L R   +  +Q
Sbjct: 21  KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQ 63


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 78  RNRFKPVKMSSSLNWMIIRNNNAF 149
           R R K  K+ SSL+   I NNN +
Sbjct: 306 RERSKESKIISSLSNKTIHNNNNY 329


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 78  RNRFKPVKMSSSLNWMIIRNNNAF 149
           R R K  K+ SSL+   I NNN +
Sbjct: 295 RERSKEPKIISSLSNKTIHNNNNY 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,772
Number of Sequences: 438
Number of extensions: 3176
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)