Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M17
         (936 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.18 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.24 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.24 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   3.0  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   3.0  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   3.0  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   3.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 315 FCEFCRRVVRKLRWRQPSNARATNSGGKIYMGTERPSLRTCKGTS 181
           FC+  +R + K++WR+P  A         Y+  E  +LRT  G S
Sbjct: 24  FCQPTQRTMSKIQWRKPKPAMVEEKTQLRYL-EELNALRTELGAS 67


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 131  SSFTYALTMSDAPGSPHEVPLHVLSEGRSVPI*ILPP 241
            ++ TY  T  D PGSP ++ + V+S  +++ I  LPP
Sbjct: 1202 TTVTYCQTEEDVPGSPADIKV-VVSSPQALFISWLPP 1237


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 131  SSFTYALTMSDAPGSPHEVPLHVLSEGRSVPI*ILPP 241
            ++ TY  T  D PGSP ++ + V+S  +++ I  LPP
Sbjct: 1198 TTVTYCQTEEDVPGSPADIKV-VVSSPQALFISWLPP 1233


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/39 (20%), Positives = 21/39 (53%)
 Frame = -3

Query: 685 NGYKLSXSIXNXTNKAFFSLHFXCGLSQXIXVFYXVWIP 569
           N YK + +  N   K ++++++   +   + V+Y  ++P
Sbjct: 93  NNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNFLP 131


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/39 (20%), Positives = 21/39 (53%)
 Frame = -3

Query: 685 NGYKLSXSIXNXTNKAFFSLHFXCGLSQXIXVFYXVWIP 569
           N YK + +  N   K ++++++   +   + V+Y  ++P
Sbjct: 93  NNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNFLP 131


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/39 (20%), Positives = 21/39 (53%)
 Frame = -3

Query: 685 NGYKLSXSIXNXTNKAFFSLHFXCGLSQXIXVFYXVWIP 569
           N YK + +  N   K ++++++   +   + V+Y  ++P
Sbjct: 93  NNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNFLP 131


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/39 (20%), Positives = 21/39 (53%)
 Frame = -3

Query: 685 NGYKLSXSIXNXTNKAFFSLHFXCGLSQXIXVFYXVWIP 569
           N YK + +  N   K ++++++   +   + V+Y  ++P
Sbjct: 93  NNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVYYGNFLP 131


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 41   RF*LQXFDFDQTSFEKTEKVISNY*VFSIFSSFTYALTMSDAPGSPHEVP 190
            ++ L+ F FD+   +K   +ISNY + ++       + M D   S H  P
Sbjct: 881  KYALKFFPFDKHILDKLPTLISNY-IEAVKEGKFMNVNMLDTYESVHSFP 929


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,012
Number of Sequences: 438
Number of extensions: 3326
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)