Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M16
         (910 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.13 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.95 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 616  PXPPPPPPXXG 648
            P PPPPPP  G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 23.4 bits (48), Expect(2) = 0.13
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 613  PPXPPPPP 636
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.6 bits (46), Expect(2) = 0.13
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 622  PPPPPPXXGG 651
            PPPPPP   G
Sbjct: 1356 PPPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 616 PXPPPPPPXXGG 651
           P PPPPPP   G
Sbjct: 341 PAPPPPPPSSSG 352



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1

Query: 613 PPXPPPPPPXXGGXPPPPPK 672
           PP P PPPP      P   K
Sbjct: 338 PPKPAPPPPPPSSSGPDSAK 357


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 616  PXPPPPPP 639
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 613 PPXPPPPPPXXGGXPPPPP 669
           PP P   PP  GG P  PP
Sbjct: 39  PPNPSQGPP-PGGPPGAPP 56


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 625 PPPPPXXGG 651
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,986
Number of Sequences: 438
Number of extensions: 5579
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)