Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M06
         (992 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U94832-1|AAB53222.1|  711|Homo sapiens KSRP protein.                   33   2.1  
BC085004-1|AAH85004.1|  710|Homo sapiens KHSRP protein protein.        33   2.1  
AF093747-1|AAD29861.1|  115|Homo sapiens KH type splicing regula...    33   2.1  

>U94832-1|AAB53222.1|  711|Homo sapiens KSRP protein.
          Length = 711

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +1

Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXP 657
           PPP GG     G G  PPP P       GG P
Sbjct: 14  PPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGP 45



 Score = 30.7 bits (66), Expect = 8.6
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -3

Query: 657 GXPPPQXXXXXXGGGGXXPPPXXKXXXPPXGGGKXXXXP 541
           G PPP       GG G  PPP         GGG     P
Sbjct: 12  GPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPCGGGP 50


>BC085004-1|AAH85004.1|  710|Homo sapiens KHSRP protein protein.
          Length = 710

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +1

Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXP 657
           PPP GG     G G  PPP P       GG P
Sbjct: 14  PPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGP 45



 Score = 30.7 bits (66), Expect = 8.6
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -3

Query: 657 GXPPPQXXXXXXGGGGXXPPPXXKXXXPPXGGGKXXXXP 541
           G PPP       GG G  PPP         GGG     P
Sbjct: 12  GPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGP 50


>AF093747-1|AAD29861.1|  115|Homo sapiens KH type splicing
           regulatory protein protein.
          Length = 115

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +1

Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXP 657
           PPP GG     G G  PPP P       GG P
Sbjct: 14  PPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGP 45



 Score = 30.7 bits (66), Expect = 8.6
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -3

Query: 657 GXPPPQXXXXXXGGGGXXPPPXXKXXXPPXGGGKXXXXP 541
           G PPP       GG G  PPP         GGG     P
Sbjct: 12  GPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPCGGGP 50


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,090,587
Number of Sequences: 237096
Number of extensions: 1258563
Number of successful extensions: 5280
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4047
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 13324901280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)