Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_L18
         (922 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       48   2e-07
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.97 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.0  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   5.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   5.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   5.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   5.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 47.6 bits (108), Expect = 2e-07
 Identities = 18/45 (40%), Positives = 29/45 (64%)
 Frame = +1

Query: 502 EITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGL 636
           ++ + G N+P+P  +F+ AG  + V+D I K G+ KPTP+Q   L
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHAL 227



 Score = 40.7 bits (91), Expect = 2e-05
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
 Frame = +2

Query: 617 PFKPKGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQP----KXSRGDGPIALVLA 784
           P +    PI ++G D++  A TGSGKT ++ +P I  +  +       S    P  ++++
Sbjct: 221 PVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVS 280

Query: 785 PTRELA----QQYXKFVIN 829
           PTREL     QQ  KF +N
Sbjct: 281 PTRELTIQIWQQIVKFSLN 299


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 448 LDVEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPD--YVMDE 585
           +D+ K+    +E W +E  I  KG+ + +     D  G P   Y ++E
Sbjct: 371 IDLRKKQLKSLEDWENEMNIITKGKPLIRVENIIDLEGAPQNFYYIEE 418


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 656 HDMVGIASTGSGKTLSYILPAIVHIN 733
           HD+   ASTG+G  +S ++ A+  +N
Sbjct: 176 HDIAVNASTGNGGLVSLVVQAMDPVN 201


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = -1

Query: 319 PVHNEGFCYGCDSYFGFEIDCDAYHDYGPFRGPLC 215
           P+    + + C  Y+      DAY D     G LC
Sbjct: 60  PIFGTRWIFSCIGYYKLNKIHDAYKDLNQRYGALC 94


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 274 GFEIDCDAYHDYGPFRG 224
           G+EI CD Y  +G   G
Sbjct: 124 GWEIGCDVYSVFGSISG 140


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 5/22 (22%), Positives = 16/22 (72%)
 Frame = -3

Query: 725 VQLQAIYRKEFFQNLLMLFLPC 660
           +++  ++++EF   L+ +++PC
Sbjct: 231 LKVDLLFKREFSYYLIQIYIPC 252


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 5/22 (22%), Positives = 16/22 (72%)
 Frame = -3

Query: 725 VQLQAIYRKEFFQNLLMLFLPC 660
           +++  ++++EF   L+ +++PC
Sbjct: 231 LKVDLLFKREFSYYLIQIYIPC 252


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 274 GFEIDCDAYHDYGPFRG 224
           G+EI CD Y  +G   G
Sbjct: 124 GWEIGCDVYSVFGSISG 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,064
Number of Sequences: 438
Number of extensions: 4006
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)