Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_L11
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    29   0.078
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    29   0.078
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    29   0.078
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    27   0.18 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   1.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          24   1.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   2.2  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 28.7 bits (61), Expect = 0.078
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +2

Query: 320 SHRRNRDHDGGGLRYTNTDWEAKEAHYQRELDEARARATQMEKTMRWWSDCTANWREKWS 499
           S  RNR++     RY     E ++   +R   +  +R+ + E+      +    +RE W 
Sbjct: 5   SRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWK 64

Query: 500 K---VRTERNKAREE--VKALKNK 556
           +    RTER ++RE   + +L NK
Sbjct: 65  ERSRDRTERERSREPKIISSLSNK 88


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 28.7 bits (61), Expect = 0.078
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +2

Query: 320 SHRRNRDHDGGGLRYTNTDWEAKEAHYQRELDEARARATQMEKTMRWWSDCTANWREKWS 499
           S  RNR++     RY     E ++   +R   +  +R+ + E+      +    +RE W 
Sbjct: 5   SRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWK 64

Query: 500 K---VRTERNKAREE--VKALKNK 556
           +    RTER ++RE   + +L NK
Sbjct: 65  ERSRDRTERERSREPKIISSLSNK 88


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 28.7 bits (61), Expect = 0.078
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +2

Query: 320 SHRRNRDHDGGGLRYTNTDWEAKEAHYQRELDEARARATQMEKTMRWWSDCTANWREKWS 499
           S  RNR++     RY     E ++   +R   +  +R+ + E+      +    +RE W 
Sbjct: 5   SRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWK 64

Query: 500 K---VRTERNKAREE--VKALKNK 556
           +    RTER ++RE   + +L NK
Sbjct: 65  ERSRDRTERERSREPKIISSLSNK 88


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +2

Query: 320 SHRRNRDHDGGGLRYTNTDWEAKEAHYQRELDEARARATQMEKTMRWWSDCTANWREKWS 499
           S  RNR++     RY     E ++   +R   +  +R+ + E+      +    +RE W 
Sbjct: 5   SRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWK 64

Query: 500 K---VRTERNKAREE--VKALKNK 556
           +    RTER ++RE   + +L N+
Sbjct: 65  ERSRDRTERERSREPKIISSLSNR 88


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 404 VGNVPPWLPSLCLYNV 357
           + NV PWL S+CL+ +
Sbjct: 1   MANVVPWLLSICLFGL 16


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 407 LVGNVPPWLPSLCLYNVSLLHRGLYSVCDFHRVSFVPFSHLRCV-IQNITE 258
           ++ N+P WL  + +  V LL  G   +     +  VP +++  + +QNI +
Sbjct: 44  IIANIPTWLSFIRIVLVILLRAGYVLI----HIGSVPVNNINLILLQNIID 90


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 443 PSG*REHVPRPVLVGNVPP 387
           PS   E +P PV  GN PP
Sbjct: 331 PSHYIEQIPAPVYYGNFPP 349


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 350 LHRGLY-SVCDFHRVSFVPFSHLRCVIQ 270
           L  G++ S CD   V F PF   RCV++
Sbjct: 122 LSHGIFRSSCDID-VEFFPFDEQRCVLK 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,571
Number of Sequences: 438
Number of extensions: 4330
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)