Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_L08
         (916 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    27   0.31 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   5.1  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   6.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 451 MPFDDLHLYSFVFIFHIHMINLKFGLMLYSSVEYILQLHLKA 576
           +PF+ + + + +  +   +    F LML S + Y+ +LH+ A
Sbjct: 296 IPFNGIQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHVDA 337


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 195 SRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHRTDP 302
           S S S + +++I P +     H++S   +S    DP
Sbjct: 46  SSSNSDSLSMTIPPSIDRSSIHEESYLAESSRSIDP 81


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 472 SANHRMAYRNTQYVHNYEIILYRFQCRRCSLDSN 371
           S ++R  + N  Y +NY    Y   C++   + N
Sbjct: 84  SLSNRTIHNNNNYKYNYNNNNYNNNCKKLYYNIN 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,861
Number of Sequences: 438
Number of extensions: 4799
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)