Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_L02
         (916 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X12791-1|CAA31280.1|  144|Homo sapiens protein ( Human mRNA for ...   138   2e-32
BC010947-1|AAH10947.1|  144|Homo sapiens signal recognition part...   138   2e-32
BC017830-1|AAH17830.1|  110|Homo sapiens SRP19 protein protein.       113   8e-25

>X12791-1|CAA31280.1|  144|Homo sapiens protein ( Human mRNA for
           19kD protein of signal recognition particle (SRP). ).
          Length = 144

 Score =  138 bits (335), Expect = 2e-32
 Identities = 66/112 (58%), Positives = 87/112 (77%), Gaps = 1/112 (0%)
 Frame = +3

Query: 288 SDVERWICIYPAYLNSKKTLAEGRRLPKSVCVENPTHQEIRDVLLATGLRVGVE-NKLYS 464
           +D +R+ICIYPAYLN+KKT+AEGRR+P S  VENPT  EI+DV  A GL V +E NK+YS
Sbjct: 10  ADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYS 69

Query: 465 RECSKEMLYRGRIRVQIKNDDGAPVNPEFPTRESVMKYIGESIPKLKTRQNR 620
           RE ++++ YRGR+RVQ+K +DG+    +FP+R+SVM Y  E IPKLKTR  +
Sbjct: 70  REWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQK 121


>BC010947-1|AAH10947.1|  144|Homo sapiens signal recognition
           particle 19kDa protein.
          Length = 144

 Score =  138 bits (335), Expect = 2e-32
 Identities = 66/112 (58%), Positives = 87/112 (77%), Gaps = 1/112 (0%)
 Frame = +3

Query: 288 SDVERWICIYPAYLNSKKTLAEGRRLPKSVCVENPTHQEIRDVLLATGLRVGVE-NKLYS 464
           +D +R+ICIYPAYLN+KKT+AEGRR+P S  VENPT  EI+DV  A GL V +E NK+YS
Sbjct: 10  ADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYS 69

Query: 465 RECSKEMLYRGRIRVQIKNDDGAPVNPEFPTRESVMKYIGESIPKLKTRQNR 620
           RE ++++ YRGR+RVQ+K +DG+    +FP+R+SVM Y  E IPKLKTR  +
Sbjct: 70  REWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQK 121


>BC017830-1|AAH17830.1|  110|Homo sapiens SRP19 protein protein.
          Length = 110

 Score =  113 bits (272), Expect = 8e-25
 Identities = 53/91 (58%), Positives = 72/91 (79%), Gaps = 1/91 (1%)
 Frame = +3

Query: 288 SDVERWICIYPAYLNSKKTLAEGRRLPKSVCVENPTHQEIRDVLLATGLRVGVE-NKLYS 464
           +D +R+ICIYPAYLN+KKT+AEGRR+P S  VENPT  EI+DV  A GL V +E NK+YS
Sbjct: 10  ADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYS 69

Query: 465 RECSKEMLYRGRIRVQIKNDDGAPVNPEFPT 557
           RE ++++ YRGR+RVQ+K +DG+    +FP+
Sbjct: 70  REWNRDVQYRGRVRVQLKQEDGSLCLVQFPS 100


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,893,590
Number of Sequences: 237096
Number of extensions: 2071784
Number of successful extensions: 3657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3643
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11881370308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)