Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_K19
         (921 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   2.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.9  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 776 APSSYCGSPKLCRSQASTMPVNRGVSSLF 690
           +PS    SP+   S AST P  R  SS++
Sbjct: 61  SPSPTGSSPQHSGSSASTSPAARTTSSMY 89


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 12/56 (21%), Positives = 25/56 (44%)
 Frame = +2

Query: 434 AQAYENYGDEDGFLYITYASQEVFGYQDDMQEKSNREVEAIRHRFPNKVPLYVTRY 601
           A+A+ +  D    ++      + F Y     EK    +++  + + N VP+ V R+
Sbjct: 18  AKAHYSLRDFKANIFQVKYQWKYFDYNFGSDEKRQAAIQSGEYNYKNNVPIDVDRW 73


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -1

Query: 678 RNCDIVSSCGTKNFVLPNTGTSRSLTYLVTYSGTL 574
           R C+++++  T+ + L N G   + TY+  Y  ++
Sbjct: 193 RPCNVLATSLTEPYTLRNYGRRINCTYVALYPSSV 227


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 776 APSSYCGSPKLCRSQASTMPVNRGV 702
           AP+S C SP+    +   MPV + V
Sbjct: 600 APTSVCSSPRSEDKEVEDMPVLKRV 624


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,787
Number of Sequences: 438
Number of extensions: 6276
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)