Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N16
         (838 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    25   0.74 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   3.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   5.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.1  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 761 EIGVNVAIXRRRIR-SPQLTPLGAAP 687
           E+G N+    +R R SPQL+P+ + P
Sbjct: 461 ELGTNIYTSSKRQRTSPQLSPMSSLP 486


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 296 LPEWMSAPHSTGTSI 340
           +P W++ PHS G ++
Sbjct: 4   VPGWLTPPHSLGNTV 18


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/45 (24%), Positives = 18/45 (40%)
 Frame = -3

Query: 635 QQLKYQPSMSHGSCNRALGILLQQFPLVVDLLIPSCGSSNDMLQY 501
           Q + +   MSH       G      P  ++ L+P+  S  D+  Y
Sbjct: 344 QAMLHHNPMSHHLKQEPSGFTSSNHPFSINRLLPTAESKADIKMY 388


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +2

Query: 614 MAGILVAGWDKKKGAQIYSIPIGGMVQRQAVSIGGS 721
           +A   V   D      +Y +P    +++QA+  GG+
Sbjct: 492 VASSKVGSADHSARINVYGLPFVRSMEKQAIVAGGT 527


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,888
Number of Sequences: 336
Number of extensions: 4455
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)