Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N16
         (838 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)            102   3e-22
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-09
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)                  42   5e-04
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)         41   0.001
SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)               30   2.7  
SB_12417| Best HMM Match : Antimicrobial11 (HMM E-Value=7.9)           29   3.5  
SB_10740| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  
SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26)                28   8.2  

>SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)
          Length = 131

 Score =  102 bits (245), Expect = 3e-22
 Identities = 49/98 (50%), Positives = 64/98 (65%)
 Frame = +2

Query: 545 DPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIGGMVQRQAVSIGGSG 724
           +P LV+TAA +FRE+CY YRD L AGI+ AGWDK  G Q+YSIP+GGM  RQ  +IGGSG
Sbjct: 3   EPVLVKTAANLFREMCYGYRDQLSAGIICAGWDKLNGGQVYSIPLGGMCIRQPFTIGGSG 62

Query: 725 SSYXLWLR*RQFQAQYDQGRSQKFVTDTLTLAILRDGS 838
           S+Y        +++   +     FV   + LA+ RDGS
Sbjct: 63  STYIYGHCDATYKSGMSKEECFNFVKTAVALAMSRDGS 100


>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 50.0 bits (114), Expect(2) = 2e-09
 Identities = 25/92 (27%), Positives = 46/92 (50%)
 Frame = +2

Query: 329 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 508
           GT+ +A +F  GV++  DSR T G+YIA++   K+ +I   +    +G AAD      ++
Sbjct: 28  GTTTLAFKFKHGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 87

Query: 509 TYHLNFHKMELGDPPLVETAAAIFRELCYNYR 604
                 +++   +   V  A+ I   + Y Y+
Sbjct: 88  AKQCRIYELRNKERISVAAASKILANMVYYYK 119



 Score = 30.3 bits (65), Expect(2) = 2e-09
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 620 GILVAGWDKKKGAQIYSIPIGGMVQRQAVSIGGSGSSY 733
           G ++ GWDKK     Y    G  +  Q  S+ GSGS+Y
Sbjct: 152 GTMICGWDKKGPGLYYVDSDGTRLSNQMFSV-GSGSTY 188


>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
          Length = 938

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 21/71 (29%), Positives = 39/71 (54%)
 Frame = +2

Query: 296  LPEWMSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGS 475
            L +W   P +TGTS++  +F+GGV++ AD+  + G+    R   +L ++ +      +G 
Sbjct: 866  LADWY--PTTTGTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGD 923

Query: 476  AADTQAIADIV 508
             AD Q I  ++
Sbjct: 924  YADFQYIKSVL 934


>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 41/201 (20%), Positives = 79/201 (39%), Gaps = 1/201 (0%)
 Frame = +2

Query: 233 SLLPTTSKMATSVINTYSDPCLPEWMSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIA 412
           S+  + +KM     + Y       + S     G +++A   +   VI +D+R + G  I 
Sbjct: 55  SMFYSLTKMQVGSESYYGGNPKQTYFSPYAFNGGTVLAISGEDFAVIASDTRLSQGFQIH 114

Query: 413 NRVTDKLTKITDQIYCCRSGSAADTQAIADIVTYHLNFHKMELGDPPLVETAAAIFRELC 592
            R + K+ K+T       SG   D   +   ++  L  ++ + G        A +   + 
Sbjct: 115 TRDSPKVYKLTGSTVLGCSGFHGDCLTLTKHISARLQMYEHDHGKAMSCTAIAQMLSTML 174

Query: 593 YNYR-DSLMAGILVAGWDKKKGAQIYSIPIGGMVQRQAVSIGGSGSSYXLWLR*RQFQAQ 769
           Y  R        ++AG D +    ++S    G  +R+    GGS S+    L   Q   +
Sbjct: 175 YYRRFFPYYTYNILAGLDSEGKGCVFSFDPVGSYEREVYRAGGSASALLQPLLDNQIGFK 234

Query: 770 YDQGRSQKFVTDTLTLAILRD 832
             +G     +T    +A+++D
Sbjct: 235 NQEGVPHTPLTRDKAVALVKD 255


>SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)
          Length = 857

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 619 WYFSCWMGQKERSSNLLHTYWWYGAAPSGVNWG 717
           W  +CW G+  R+S+LL      G A   ++WG
Sbjct: 577 WLRNCWEGRSVRASSLLRQLAKGGCAARRLSWG 609


>SB_12417| Best HMM Match : Antimicrobial11 (HMM E-Value=7.9)
          Length = 219

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 249 PVKWRHQ*SIPTLILAYRSG*APLIVRELQSW-HASLMVESSLELIPVPQQALTSPIESP 425
           P   +H+ S PTL  A R+     I R+L+S  H S  V    ELIP+      SP++SP
Sbjct: 146 PGMLKHRESAPTLH-APRT-----IPRDLRSMSHDSGRVPRDPELIPLSSPGTLSPVQSP 199

Query: 426 IS*RKSLTRYTAAAQD 473
            + R   +R  +  +D
Sbjct: 200 PTPRPQFSRKASIRRD 215


>SB_10740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 502 YCNISFELPQDGIRRSTTSGNCCSNIPRALLQLP*LIDGWYFSC 633
           YC++  +L Q+ I R  + GNC     R L   P  +  W  +C
Sbjct: 29  YCHVVRKLTQNSITRGVSRGNCMVGF-RPLGYPPMHVPAWQITC 71


>SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1935

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 446 DQIYCCRSGSAADTQAIAD-IVTYHLNFHKMELG-DPPLVETAAAIFRELCYNYRDSLMA 619
           D +  C S     T+   D ++TY  N H  + G DP   E      +ELC ++ D+L  
Sbjct: 358 DNVIVCVSQDEIATRLPRDNVITY--NVHWSDEGIDPESCEEHQNYIKELCDHFYDTLKG 415

Query: 620 GILVAGWDKKK 652
            I  A  +K+K
Sbjct: 416 SIQDAIAEKEK 426


>SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26)
          Length = 611

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +2

Query: 305 WMSAPHSTGTSIMACEFDGGVVIGADSRTTTGAY---IANRVTDKLTKITDQIYCCRSGS 475
           W S PH    ++    F+G   IG  +   T  Y   ++ R  + +  + + +   R G+
Sbjct: 29  WKSPPHLESVALQRARFNGEPSIGGITSAFTSTYETSLSERPVENVYTVCNSLAAGRGGT 88

Query: 476 AADTQAI 496
           ++   A+
Sbjct: 89  SSSPVAV 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,076,005
Number of Sequences: 59808
Number of extensions: 511804
Number of successful extensions: 1652
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1648
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)