Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N14
         (1463 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58020.1 68416.m06466 DNAJ heat shock N-terminal domain-conta...    30   4.4  
At5g21280.1 68418.m02555 hydroxyproline-rich glycoprotein family...    29   7.7  

>At3g58020.1 68416.m06466 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 580

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 586 GGXXGGGXKKNXXGXGGGXXFFF 654
           GG  GGG  +   G GGG  FFF
Sbjct: 28  GGHGGGGHGRGGHGRGGGGIFFF 50


>At5g21280.1 68418.m02555 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 302

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 638 PPPXPXXFFFXPPPXXPPXFF 576
           PPP P   F  PPP  PP  F
Sbjct: 104 PPPQPLNLFSPPPPPPPPDPF 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.153    0.498 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,023,419
Number of Sequences: 28952
Number of extensions: 88490
Number of successful extensions: 490
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3884352576
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)