Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N07
         (1045 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33453| Best HMM Match : BRF1 (HMM E-Value=1.4)                      31   2.0  
SB_37016| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)                        29   4.7  
SB_9624| Best HMM Match : PAPA-1 (HMM E-Value=1.2)                     29   6.2  
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)               29   6.2  

>SB_33453| Best HMM Match : BRF1 (HMM E-Value=1.4)
          Length = 412

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 499 HCSHNRTEGDSERGPSSRARR*NQSGKHRHGLIGQHLDEAFRSP 630
           H  H R++  SE  PSS ++R     KH+      H+DE+   P
Sbjct: 146 HSKHKRSKSSSETDPSSHSKR----QKHKKKKSSAHIDESDEEP 185


>SB_37016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 401 GAMEAHA-VMTLEKLQARGNYTFATWFNSVRGPFTVHITGLRVTANAGL 544
           G+M A   ++ L+ +Q RG+Y    WF +  G + +++  +R+T +  +
Sbjct: 88  GSMNALTLILDLQLIQIRGSYMSDFWFGTSVGYYDLNLNKVRITKHLAI 136


>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1981

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 293 PVPDVKQSLTLGTMNFKNIALYGTNEFRLNYVKADIGAMEAHAVMTLEKLQARGN 457
           P  D  +++ L    F  I+L G     LNY++A +G +EA   +    L+ RG+
Sbjct: 145 PTCDQLKTMRLDKSPFVMISLIGQELLSLNYLQAAVGCLEAALKIGTCGLKLRGS 199


>SB_9624| Best HMM Match : PAPA-1 (HMM E-Value=1.2)
          Length = 278

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 245 QPDPTGLPGAKLPDPYPVPDVKQSLTLGTMNFKNIALYG 361
           +P+ TG+ G   P P   PD  Q+   G    +++AL G
Sbjct: 190 KPNGTGMSGISGPRPKKAPDKNQAKLSGGPKLRHVALIG 228


>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 867

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +2

Query: 248 PDPTGLPGAKLPDPYPVPDVKQSL---TLGTMNFKNIALYGTNEFR 376
           P P     AKLP+P P+P++  +L   TLG +    +      EFR
Sbjct: 235 PSPPRPLAAKLPEPPPIPNMPPTLPPPTLGYLPTARLTRESVTEFR 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,427,940
Number of Sequences: 59808
Number of extensions: 377601
Number of successful extensions: 957
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3130351752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)