Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_N06
(1084 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 34 0.17
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 34 0.17
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 33 0.40
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 31 2.1
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4) 31 2.1
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 30 3.7
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 30 3.7
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 29 8.6
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 34.3 bits (75), Expect = 0.17
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP GG P PPP K + PPPPP
Sbjct: 250 PPPPMRGPTSGGEPPP-PKNAPPPPKRGSSNPPPPP 284
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 34.3 bits (75), Expect = 0.17
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP GG P PPP K + PPPPP
Sbjct: 162 PPPPMRGPTSGGEPPP-PKNAPPPPKRGSSNPPPPP 196
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 33.1 bits (72), Expect = 0.40
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP GG P PPP PPPPP
Sbjct: 664 PPPPPGGQAGGAPPP-----PPPPLPGGAAPPPPPP 694
Score = 29.1 bits (62), Expect = 6.5
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFF----FXPPPXKXXKTXPPPPPXXF 541
PPPP GG P PPP PPPPP F
Sbjct: 665 PPPPGGQAGGAPPPPPPPLPGGAAPPPPPPIGGGAPPPPPPGF 707
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 31.1 bits (67), Expect = 1.6
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 428 PPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPP 529
PPP GGG P PPP + PPPP
Sbjct: 559 PPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPPP 592
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXF--FFFXPPPXKXXKTXPPPP 529
PPPP GGG P + PPP PPPP
Sbjct: 503 PPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPP 539
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP G G P PPP PPPPP
Sbjct: 727 PPPPSPQPGCAGLPPP----PPPPPPGCAGLPPPPP 758
>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
Length = 330
Score = 30.7 bits (66), Expect = 2.1
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP G F PPP PPPPP
Sbjct: 281 PPPPPPPSNTPGMFASSGFQPPPPPPTDFAPPPPPP 316
Score = 30.3 bits (65), Expect = 2.8
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Frame = +2
Query: 425 PPPPXNXXG---GGGXXPX-----FFFFXPPPXKXXKTXPPPPPXXF 541
PPPP N G G P F PPP + PPPPP F
Sbjct: 284 PPPPSNTPGMFASSGFQPPPPPPTDFAPPPPPPEPTSELPPPPPPPF 330
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 30.3 bits (65), Expect = 2.8
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP G P PPP PPPPP
Sbjct: 374 PPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPP 409
Score = 29.9 bits (64), Expect = 3.7
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP N P PPP K PPPPP
Sbjct: 347 PPPPTNNPPS--PPPPTNNTPPPPPPTNKPPPPPPP 380
Score = 29.1 bits (62), Expect = 6.5
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP G P PPP PPPPP
Sbjct: 375 PPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPPP 410
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 29.9 bits (64), Expect = 3.7
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP GG P PP PPPPP
Sbjct: 363 PPPPPPPPVGGPPPPPPPIEGRPPSSLGNPPPPPPP 398
Score = 29.5 bits (63), Expect = 4.9
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP G P PPP T PPPPP
Sbjct: 297 PPPPSR--GAPPPPPSRGSAPPPPPARMGTAPPPPP 330
Score = 29.1 bits (62), Expect = 6.5
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP G P PPP PPPPP
Sbjct: 338 PPPPSR----GAPPPPSMGMAPPPVGGAAPPPPPPP 369
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 29.9 bits (64), Expect = 3.7
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP GG P PPP PPPPP
Sbjct: 139 PPPPPIAPATGGPPP------PPPIAPATGGPPPPP 168
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.5 bits (63), Expect = 4.9
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +2
Query: 425 PPPPXNXXG--GGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP GGG P PPP PPPPP
Sbjct: 956 PPPPGGSAPPPGGGAPP----LPPPPGGSAPPPPPPPP 989
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 28.7 bits (61), Expect = 8.6
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
P PP GG P PPP PPPPP
Sbjct: 302 PAPPPPPPPGGAPPPPPPPPPPPPGDGGAPPPPPPP 337
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,145,265
Number of Sequences: 59808
Number of extensions: 180639
Number of successful extensions: 602
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3284497861
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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