Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_N02
(872 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 98 8e-21
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 98 8e-21
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 89 4e-18
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 68 7e-12
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 68 9e-12
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 67 1e-11
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 45 6e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 40 0.002
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 39 0.005
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 38 0.007
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 38 0.012
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 37 0.020
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 37 0.020
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 36 0.027
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 36 0.035
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 36 0.047
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 36 0.047
At4g07480.1 68417.m01151 hypothetical protein 35 0.082
At2g15770.1 68415.m01808 glycine-rich protein contains a domain ... 34 0.11
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 34 0.14
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 33 0.25
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 33 0.25
At4g01985.1 68417.m00265 expressed protein 33 0.33
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 32 0.44
At1g77030.1 68414.m08970 glycine-rich protein 32 0.44
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 32 0.44
At5g62440.1 68418.m07837 expressed protein 32 0.58
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 32 0.58
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 32 0.58
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 32 0.58
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 32 0.58
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 32 0.58
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 31 0.76
At5g04290.1 68418.m00422 KOW domain-containing transcription fac... 31 0.76
At3g04640.1 68416.m00497 glycine-rich protein predicted proteins... 31 0.76
At1g55250.1 68414.m06310 expressed protein weak similarity to PU... 31 0.76
At5g35980.1 68418.m04333 protein kinase family protein contains ... 31 1.0
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 31 1.0
At4g23910.1 68417.m03439 expressed protein various predicted pro... 31 1.0
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 31 1.0
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 1.0
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin... 31 1.0
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin... 31 1.0
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 31 1.3
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 31 1.3
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 31 1.3
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 31 1.3
At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protei... 31 1.3
At1g04800.1 68414.m00476 glycine-rich protein 31 1.3
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 30 1.8
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 30 1.8
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 30 1.8
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 30 1.8
At4g30460.1 68417.m04325 glycine-rich protein 30 1.8
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden... 30 1.8
At2g15780.1 68415.m01809 glycine-rich protein similar to Blue co... 30 1.8
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 30 2.3
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 30 2.3
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 30 2.3
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 30 2.3
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 30 2.3
At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear... 29 3.1
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 29 3.1
At4g27330.1 68417.m03921 sporocyteless (SPL) identical to sporoc... 29 3.1
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 3.1
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 3.1
At1g68640.1 68414.m07843 bZIP family transcription factor (PERIA... 29 3.1
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 29 3.1
At1g36675.1 68414.m04563 glycine-rich protein 29 3.1
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 29 4.1
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 29 4.1
At5g45720.1 68418.m05621 hypothetical protein 29 4.1
At1g76965.1 68414.m08961 glycine-rich protein 29 4.1
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 29 4.1
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 29 4.1
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 29 4.1
At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi do... 29 4.1
At1g07135.1 68414.m00759 glycine-rich protein 29 4.1
At5g46730.1 68418.m05757 glycine-rich protein 29 5.4
At5g20250.2 68418.m02411 raffinose synthase family protein / see... 29 5.4
At5g20250.1 68418.m02410 raffinose synthase family protein / see... 29 5.4
At4g29240.1 68417.m04182 leucine-rich repeat family protein / ex... 29 5.4
At3g56250.1 68416.m06251 expressed protein 29 5.4
At3g26400.1 68416.m03292 eukaryotic translation initiation facto... 29 5.4
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 29 5.4
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 29 5.4
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 5.4
At2g28670.1 68415.m03485 disease resistance-responsive family pr... 29 5.4
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 29 5.4
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 29 5.4
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 28 7.1
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 28 7.1
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 28 7.1
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin... 28 7.1
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 28 7.1
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 28 7.1
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 28 7.1
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri... 28 7.1
At3g10040.1 68416.m01204 expressed protein est match 28 7.1
At3g06130.1 68416.m00704 heavy-metal-associated domain-containin... 28 7.1
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 28 7.1
At2g05540.1 68415.m00586 glycine-rich protein 28 7.1
At1g72080.1 68414.m08332 hypothetical protein 28 7.1
At1g20220.1 68414.m02525 expressed protein 28 7.1
At5g10740.1 68418.m01245 protein phosphatase 2C-related / PP2C-r... 28 9.4
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 28 9.4
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 28 9.4
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ... 28 9.4
At2g44370.1 68415.m05519 DC1 domain-containing protein highly si... 28 9.4
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 9.4
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 28 9.4
At1g51460.1 68414.m05792 ABC transporter family protein similar ... 28 9.4
At1g27090.1 68414.m03302 glycine-rich protein 28 9.4
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 28 9.4
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 28 9.4
At1g19870.1 68414.m02492 calmodulin-binding family protein conta... 28 9.4
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 97.9 bits (233), Expect = 8e-21
Identities = 61/136 (44%), Positives = 79/136 (58%), Gaps = 1/136 (0%)
Frame = +2
Query: 161 IEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKST 340
++M+LDD+I N+K+R G G R G G G+G G +R T+S
Sbjct: 5 LDMSLDDMIAKNRKSRGGAGPAR--------GTGSGSG-----PGPTRRNNPNRKSTRSA 51
Query: 341 NYSRGDVNSTWKHDMFNDFGE-RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEF 517
Y STW HDMF+D E + R+S I TG TKL +SNLD+GV + DIKELF+E
Sbjct: 52 PYQSAP-ESTWGHDMFSDRSEDHRSGRSSAGIETG-TKLYISNLDYGVMNEDIKELFAEV 109
Query: 518 GILKSASVHYDRSGRS 565
G LK +VH+DRSGRS
Sbjct: 110 GELKRYTVHFDRSGRS 125
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/87 (36%), Positives = 44/87 (50%)
Frame = +3
Query: 573 TADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIRN 752
TA+VV+ R+ DA+ A+K+YN V LDG+ M I++ + + T + G G
Sbjct: 128 TAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPS-----GRPANGNSNG 182
Query: 753 NPKRGGGGIRNQSNSGARGGNXXXRGG 833
P RGG G Q G RGG GG
Sbjct: 183 APWRGGQGRGGQQRGGGRGGGGRGGGG 209
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 97.9 bits (233), Expect = 8e-21
Identities = 61/137 (44%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Frame = +2
Query: 161 IEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKST 340
++M+LDD+I N+K+R G G R G G G+G G +R T+S
Sbjct: 5 LDMSLDDMIAKNRKSRGGAGPAR--------GTGSGSG-----PGPTRRNNPNRKSTRSA 51
Query: 341 NYSRGDV-NSTWKHDMFNDFGE-RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSE 514
Y STW HDMF+D E + R+S I TG TKL +SNLD+GV + DIKELF+E
Sbjct: 52 PYQSAKAPESTWGHDMFSDRSEDHRSGRSSAGIETG-TKLYISNLDYGVMNEDIKELFAE 110
Query: 515 FGILKSASVHYDRSGRS 565
G LK +VH+DRSGRS
Sbjct: 111 VGELKRYTVHFDRSGRS 127
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/87 (36%), Positives = 44/87 (50%)
Frame = +3
Query: 573 TADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIRN 752
TA+VV+ R+ DA+ A+K+YN V LDG+ M I++ + + T + G G
Sbjct: 130 TAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPS-----GRPANGNSNG 184
Query: 753 NPKRGGGGIRNQSNSGARGGNXXXRGG 833
P RGG G Q G RGG GG
Sbjct: 185 APWRGGQGRGGQQRGGGRGGGGRGGGG 211
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 89.0 bits (211), Expect = 4e-18
Identities = 63/149 (42%), Positives = 83/149 (55%), Gaps = 14/149 (9%)
Frame = +2
Query: 161 IEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKST 340
++M+LDDIIK+N+K G G N GRGG + SG +R NR G ++
Sbjct: 5 LDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSG----SNSGPSRRFANRVG-ARTA 59
Query: 341 NYSRGDV-----NSTWKHDMFND-------FGERKLQRNSG--TITTGPTKLLVSNLDFG 478
YSR ++ W++D+F FG + G +I TG TKL +SNLD+G
Sbjct: 60 PYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETG-TKLYISNLDYG 118
Query: 479 VSDSDIKELFSEFGILKSASVHYDRSGRS 565
VS+ DIKELFSE G LK +HYDRSGRS
Sbjct: 119 VSNEDIKELFSEVGDLKRYGIHYDRSGRS 147
Score = 44.8 bits (101), Expect = 8e-05
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = +3
Query: 573 TADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEIN 689
TA+VVF R+ DA+ A+K+YN V LDG+ M I++ + ++
Sbjct: 150 TAEVVFSRRGDALAAVKRYNNVQLDGKLMKIEIVGTNLS 188
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 68.1 bits (159), Expect = 7e-12
Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Frame = +2
Query: 149 MVDQIEMALDDIIKANKKTRIGGG--AGRKFDANKRTGRGGGAGFRSNRSGG--VQRGRN 316
M D + M LD+I+K +K R G+ GRGG G GG V+RG
Sbjct: 1 MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRGPL 60
Query: 317 RGGITKSTNYS-----RGDVNSTWKHDMFNDFGERKLQRNSGTITTGPTKLLVSNLDFGV 481
S+++S R + W++ ND E L+ + T + ++NLD GV
Sbjct: 61 AVNTRPSSSFSINKLARRKRSLPWQNQ--NDLYEETLRAVGVSGVEVGTTVYITNLDQGV 118
Query: 482 SDSDIKELFSEFGILKSASVHYDRSGR 562
++ DI+EL++E G LK ++HYD++GR
Sbjct: 119 TNEDIRELYAEIGELKRYAIHYDKNGR 145
Score = 44.4 bits (100), Expect = 1e-04
Identities = 26/85 (30%), Positives = 44/85 (51%)
Frame = +3
Query: 573 TADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIRN 752
+A+VV+ R++DA++AM++YN V LDGR M +++ NT R+ + G ++
Sbjct: 149 SAEVVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGG--NTESAPVAARVNVTGLNGRMKR 206
Query: 753 NPKRGGGGIRNQSNSGARGGNXXXR 827
+ G G+R RG R
Sbjct: 207 SVFI-GQGVRGGRVGRGRGSGPSGR 230
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 67.7 bits (158), Expect = 9e-12
Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
Frame = +2
Query: 149 MVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGA-GFRSNRSGGVQRGRNRGG 325
M + M LD+I+K K R GG R + GRGGG G R G +
Sbjct: 1 MSGALNMTLDEIVKRGKTARSGG---RGISRGRGRGRGGGGRGAGPARRGPLAVNARPSS 57
Query: 326 ITKSTNYSRGDVNST-WKHDMFNDFGERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKE 502
T + R V S W+ +F D G R + + G T+L V+NLD GV++ DI+E
Sbjct: 58 FTINKPVRR--VRSLPWQSGLFED-GLRAA--GASGVEVG-TRLHVTNLDQGVTNEDIRE 111
Query: 503 LFSEFGILKSASVHYDRSGR 562
LFSE G ++ ++HYD++GR
Sbjct: 112 LFSEIGEVERYAIHYDKNGR 131
Score = 49.2 bits (112), Expect = 4e-06
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Frame = +3
Query: 573 TADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRP-EARNRIGGASVGGTIR 749
TA+VV+ R++DA +A+K+YN V LDGR M +++ ++ P R + + G ++
Sbjct: 135 TAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNVNVTGLNGRLK 194
Query: 750 NNP--KRGGGGI-RNQSNSGARG 809
++GGGG R + G RG
Sbjct: 195 RTVVIQQGGGGRGRVRGGRGGRG 217
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 67.3 bits (157), Expect = 1e-11
Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Frame = +2
Query: 383 MFNDFGE-RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSG 559
MF+D E + R+S I TG TKL +SNLD+GV + DIKELF+E G LK +VH+DRSG
Sbjct: 1 MFSDRSEDHRSGRSSAGIETG-TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 59
Query: 560 RS 565
RS
Sbjct: 60 RS 61
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/87 (36%), Positives = 44/87 (50%)
Frame = +3
Query: 573 TADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIRN 752
TA+VV+ R+ DA+ A+K+YN V LDG+ M I++ + + T + G G
Sbjct: 64 TAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPS-----GRPANGNSNG 118
Query: 753 NPKRGGGGIRNQSNSGARGGNXXXRGG 833
P RGG G Q G RGG GG
Sbjct: 119 APWRGGQGRGGQQRGGGRGGGGRGGGG 145
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 45.2 bits (102), Expect = 6e-05
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Frame = +2
Query: 233 FDANKRTGRGG---GAGFRSNRSGGVQRGRNRG-GITKSTNYSRGDVNSTWKHDMFNDFG 400
F R+G G G G+ S R GG R G G + Y + + +G
Sbjct: 185 FSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYG 244
Query: 401 ERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 565
SG+ + +L V NL +GV D ++ LF+E G + A V YDR SGRS
Sbjct: 245 SGS---GSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRS 297
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 380 DMFNDFGERK-LQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR- 553
DMF D + ++RNS + KL V NL F V + + +LF G ++ V YD+
Sbjct: 79 DMFADGDDSAPVERNS---FSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKV 135
Query: 554 SGRS 565
+GRS
Sbjct: 136 TGRS 139
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Frame = +2
Query: 227 RKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG-GITKSTNYSRGDVNSTWKHDMFNDFGE 403
++ ++ R R GG G S R GG R G G + Y + + +G
Sbjct: 180 KREESFSRGPRSGGYG--SERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGS 237
Query: 404 RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 565
SG+ + +L V NL +GV D ++ LF+E G + A V YDR SGRS
Sbjct: 238 GS---GSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRS 289
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 380 DMFNDFGERK-LQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR- 553
DMF D + ++RNS + KL V NL F V + + +LF G ++ V YD+
Sbjct: 79 DMFADGDDSAPVERNS---FSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKV 135
Query: 554 SGRS 565
+GRS
Sbjct: 136 TGRS 139
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +2
Query: 422 SGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR 562
SG + + L VSNLDF +++SDI LFS FG + +V DR R
Sbjct: 49 SGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTR 95
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +2
Query: 452 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 565
L V NLD V+D ++ELF+EFG + S V D SG S
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTS 367
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +2
Query: 446 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 565
+ L V NLD +SD +KE+FS FG + S+ V D +G S
Sbjct: 132 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTS 171
Score = 37.5 bits (83), Expect = 0.012
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +2
Query: 404 RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 565
R+ +R+S T T + V NL +D D+K F E+G + SA V D G+S
Sbjct: 15 RRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKS 68
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 416 RNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLXY 574
R+ T +G + + NLD + + + E FS FG + S V D +GRS Y
Sbjct: 126 RDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGY 178
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 452 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 565
L + NLD V D +KE+FSE+G + S+ V + G S
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMS 371
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 36.7 bits (81), Expect = 0.020
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2
Query: 449 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 565
++ V NL +GV D ++ LFSE G + A V YDR SGRS
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRS 244
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 449 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 565
KL V NL F V + + +LF G ++ V YD+ +GRS
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRS 131
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 36.7 bits (81), Expect = 0.020
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 407 KLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 565
KLQR+ T + V NL +SD ++ ++F EFG+ S + D G+S
Sbjct: 211 KLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKS 263
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 36.3 bits (80), Expect = 0.027
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 416 RNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLXY 574
R+ T +G + + NLD + + + E FS FG + S V D GRS Y
Sbjct: 122 RDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGY 174
Score = 34.7 bits (76), Expect = 0.082
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 446 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 565
+ L + NLD V+D +KE+FSE+G + S V + G S
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 367
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 35.9 bits (79), Expect = 0.035
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +2
Query: 446 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 565
T + V NL +D+D+K LF EFG + SA V D G+S
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKS 158
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 452 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 565
L V NLD V ++ ++ELFSEFG + S V +G S
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGIS 262
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 413 QRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLXY 574
+R+ +G + V NLD + + + ++FS FG + S V D SG S Y
Sbjct: 20 ERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGY 73
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 35.5 bits (78), Expect = 0.047
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 425 GTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 565
G++ TKL + L +G D+ +++ F+ FG + A V DR +GRS
Sbjct: 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRS 75
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 35.5 bits (78), Expect = 0.047
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 425 GTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 565
G++ TKL + L +G D+ +++ F+ FG + A V DR +GRS
Sbjct: 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRS 75
>At4g07480.1 68417.m01151 hypothetical protein
Length = 158
Score = 34.7 bits (76), Expect = 0.082
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = -1
Query: 632 VILFHSLHSIC-FSFKHNICS-TLKIYLTDHNVQMHF 528
++ FHSLH + FS + IC L++Y+ +H +++HF
Sbjct: 1 MVYFHSLHELSPFSTRWMICDMVLRVYIKEHKLRLHF 37
>At2g15770.1 68415.m01808 glycine-rich protein contains a domain
related to blue copper-binding protein; similar to
Stellacyanin (SP:P00302) {Rhus vernicifera}
Length = 301
Score = 34.3 bits (75), Expect = 0.11
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Frame = +2
Query: 221 AGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYS-RGDVNSTWKHDMFNDF 397
+G +N G G G G SNR G N G +S N+S + + +W + ND
Sbjct: 69 SGSGLGSNSNNGSGWGWGTGSNRGSGSGSSTNPDGSRRSWNWSLKSGWSWSWGSN-DNDS 127
Query: 398 GERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSE---FGILKSASVHYDRSGR 562
SG P K++V D D K+ S+ F + YD+S +
Sbjct: 128 NSSGSDSGSGLDRETPKKIIVGGSDGWKKGLDYKDWASKNAPFYVNDVLVFKYDKSAK 185
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 446 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 565
+KL + L + V + +K+ FS FG + + YD+ SGRS
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRS 81
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 33.1 bits (72), Expect = 0.25
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Frame = +2
Query: 224 GRKFDANKRTGRGGGAGFR--SNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFNDF 397
G K ++ TGR G GF ++ S ++ G S+ R + K
Sbjct: 202 GAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPA 261
Query: 398 GERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGIL 526
+ Q NSG T + V +D V++ D+K +F +FG L
Sbjct: 262 SYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGEL 304
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 446 TKLLVSNLDFGVSDSDIKELFSEFGILKSASV 541
T + V LD V+D D+K+ FSEFG + S +
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI 337
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +2
Query: 209 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI 328
IGGGAG G GGG R +SGG G GG+
Sbjct: 140 IGGGAGGAIGGGASGGVGGGGKGRGGKSGGGAGGGVGGGV 179
Score = 31.5 bits (68), Expect = 0.76
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 209 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI 328
+GGGAG G GGG R + GG G GG+
Sbjct: 85 VGGGAGGAIGGGASGGAGGGGKGRGRKGGGGAGGGVGGGV 124
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGV-QRGRNRGG 325
GGGAG A G G G SGGV G+ RGG
Sbjct: 127 GGGAGGSVGAGGGIGGGAGGAIGGGASGGVGGGGKGRGG 165
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +2
Query: 209 IGGGA-GRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 325
IGGGA G K GR GG G GGV G GG
Sbjct: 93 IGGGASGGAGGGGKGRGRKGGGGAGGGVGGGVGAGGGAGG 132
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +2
Query: 209 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 325
+G GAG G GGG G SGGV G GG
Sbjct: 49 VGAGAGGGASGGIGVGGGGGGGGGIGGSGGVGAGGGVGG 87
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 322
GGG G A G GGG G GGV G G
Sbjct: 471 GGGTGGSVGAGGGVGVGGGGGIGGGAGGGVGGGVGGG 507
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +3
Query: 720 GGASVGGTIRNNPKRGGGGIRNQSNSGARGGNXXXRGGA 836
GG + GG GGGGI GA GG GGA
Sbjct: 54 GGGASGGIGVGGGGGGGGGIGGSGGVGAGGGVGGGAGGA 92
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2
Query: 449 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 565
++ V NL + V + +++LFSE G + A V YDR +GRS
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRS 284
>At1g77030.1 68414.m08970 glycine-rich protein
Length = 349
Score = 32.3 bits (70), Expect = 0.44
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Frame = +2
Query: 215 GGAGRKFDANK-RTGRGGGAGFRSNRSGG--VQRGRNRGGITKSTNYSRGDVNSTWKHDM 385
GG GR F ++ R GR GG F R G RG RGG RG S D
Sbjct: 232 GGGGRDFGSSSDRGGRSGGRDFGGRRGGASTSSRGGKRGG-------GRGGGESDPTLDT 284
Query: 386 FNDFGERKLQRNSGTITTGPTK---LLVSNLDFGVSD 487
D ++ ++ I T+ ++VS LDF SD
Sbjct: 285 CTDDSLFHVRLSNDDIRYSTTRFYGVVVSTLDFESSD 321
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 242 NKRTGRGGGAGFRSNRSGGVQRGR 313
+KR GRGG G R R GG + GR
Sbjct: 202 SKRGGRGGRGGARGGRGGGARGGR 225
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 410 LQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASV 541
L R G I T + V LD V+D D+K+ F+EFG + S +
Sbjct: 294 LTRPEGDIMN--TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI 335
>At5g62440.1 68418.m07837 expressed protein
Length = 202
Score = 31.9 bits (69), Expect = 0.58
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +2
Query: 131 EFQIITMVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNR 289
+F VDQI + L + +K G G GR +R GRGGG G R R
Sbjct: 151 DFSFRKCVDQI-LPLPENMKTPGANGNGHGGGRGGGGGRRGGRGGGRGGRFRR 202
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 440 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLXY 574
GP ++ V L + ++S ++EL FG LK + DR +G S Y
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGY 402
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 440 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLXY 574
GP ++ V L + ++S ++EL FG LK + DR +G S Y
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGY 402
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 440 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLXY 574
GP ++ V L + ++S ++EL FG LK + DR +G S Y
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGY 402
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 31.9 bits (69), Expect = 0.58
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +3
Query: 582 VVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIRNNPK 761
V F+ + A++ NG LDGR++ + EA++R G+ GG R
Sbjct: 54 VTFKDEKAMKDAIEGMNGQDLDGRSITVN-----------EAQSR--GSGGGGGHRGGGS 100
Query: 762 RGGGGIRNQSNSG--ARGGNXXXRGG 833
GGGG R + G GG RGG
Sbjct: 101 YGGGGGRREGGGGYSGGGGGYSSRGG 126
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 325
GGG GR+ +G GGG R G GR GG
Sbjct: 102 GGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGG 139
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/64 (34%), Positives = 28/64 (43%)
Frame = +2
Query: 134 FQIITMVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGR 313
F +T D E A+ D I+ + G + +A R G GGG G R S G GR
Sbjct: 51 FGFVTFKD--EKAMKDAIEGMNGQDLDGRSITVNEAQSR-GSGGGGGHRGGGSYGGGGGR 107
Query: 314 NRGG 325
GG
Sbjct: 108 REGG 111
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 325
GGG GR+ +G GGG R G GR GG
Sbjct: 119 GGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGG 156
Score = 30.3 bits (65), Expect = 1.8
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Frame = +3
Query: 582 VVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGGA----SVGGTIR 749
V F+ + A++ NG LDGR++ + A S + R GG GG
Sbjct: 54 VTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSG 113
Query: 750 NNPKRGGGGIRNQSNSG--ARGGNXXXRGG 833
GGGG R + G GG RGG
Sbjct: 114 GGGSYGGGGGRREGGGGYSGGGGGYSSRGG 143
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/74 (29%), Positives = 30/74 (40%)
Frame = +2
Query: 134 FQIITMVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGR 313
F +T D E A+ D I+ + G + +A R G GGG G R GG + G
Sbjct: 51 FGFVTFKD--EKAMKDAIEGMNGQDLDGRSITVNEAQSR-GSGGGGGHRGGGGGGYRSGG 107
Query: 314 NRGGITKSTNYSRG 355
G +Y G
Sbjct: 108 GGGYSGGGGSYGGG 121
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 31.5 bits (68), Expect = 0.76
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Frame = +2
Query: 176 DDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFR--SNRSGGVQRGRNRGGITKSTNYS 349
D ++ K G G K ++ TGR G GF ++ + ++ G ST
Sbjct: 167 DYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPM 226
Query: 350 R-GDVNSTWKHDMFNDFGERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGIL 526
R G + M + N+G T + V LD V+D ++K +F +FG L
Sbjct: 227 RIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL 286
>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
family protein
Length = 1493
Score = 31.5 bits (68), Expect = 0.76
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 13/70 (18%)
Frame = +2
Query: 212 GGGA--GRKFDANKRTGR---GGGAGFRSNRSGGVQR-GRN---RGGIT----KSTNYSR 352
GGG+ G++ D + GGG GF R GG R GRN RGG + +S+++
Sbjct: 1309 GGGSSWGKQGDGGSKPWNEHSGGGRGFGERRGGGGFRGGRNQSGRGGRSFDGGRSSSWKT 1368
Query: 353 GDVNSTWKHD 382
+ +TWK D
Sbjct: 1369 DNQENTWKSD 1378
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKST--NYSRGDVNSTWKHDM 385
GGG+G + T G G +++ GG G+ GG S+ + G S+W
Sbjct: 1259 GGGSGSAWGKQNETSNGSSWGKQNDSGGGSSWGKQDGGGGGSSWGKQNDGGGGSSWGKQ- 1317
Query: 386 FNDFGERKLQRNSG 427
D G + +SG
Sbjct: 1318 -GDGGSKPWNEHSG 1330
>At3g04640.1 68416.m00497 glycine-rich protein predicted proteins,
Arabidopsis thaliana
Length = 159
Score = 31.5 bits (68), Expect = 0.76
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Frame = +2
Query: 158 QIEMALD-DIIKAN--KKTRI----GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRN 316
++E+ D D+I+AN K T + GGG GR GR G G S+R GG R
Sbjct: 49 EVELKPDGDVIEANLPKLTVVVKKGGGGGGRGGGGFGGGGRSFGGGGSSSRGGGGSSSRG 108
Query: 317 RGG 325
GG
Sbjct: 109 GGG 111
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +2
Query: 215 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 355
GG GR F + RGGG S+R GG R GG+ Y G
Sbjct: 85 GGGGRSFGGGGSSSRGGGGS--SSRGGGGSSSRG-GGLRPIPIYGGG 128
>At1g55250.1 68414.m06310 expressed protein weak similarity to PUMA1
[Parascaris univalens] GI:3068590
Length = 522
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/43 (32%), Positives = 29/43 (67%)
Frame = +3
Query: 198 KRQGLEVVLEENLMQTKEQDVEAVLDFVATALVVYNEVEIVEA 326
++ GLE+ EE + ++ QD+++ +F+A A + E+E++EA
Sbjct: 452 EKNGLELETEEAIQDSERQDIKS--EFIAMASTLSKEMEMMEA 492
>At5g35980.1 68418.m04333 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 956
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQ-RGRNRGGITKSTNYS-RGDVNSTWKHDM 385
G G + +G+ G+ R GV+ R + +GG T ST YS + NS+ + +M
Sbjct: 691 GHGMDNFYQNEGYSGQFSGSPSRRQLDSGVKNRKQTQGGTTLSTGYSTHNNANSSLRSNM 750
Query: 386 FNDFGERKLQRNSGTITTGP 445
+N N T + P
Sbjct: 751 YNPSSTAHHLENPDTALSVP 770
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 446 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR 562
TKL V N+ F + ++++LF+ FG +KS + GR
Sbjct: 351 TKLHVKNIAFEATMKEVRQLFTPFGQIKSVGLPERTKGR 389
>At4g23910.1 68417.m03439 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 198
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 158 QIEMALDDIIK-ANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRS 292
++ MALDDIIK A +KT + G + + NK G A R+N S
Sbjct: 18 KVAMALDDIIKLAKRKTNVNKGKKPRREKNKNQNFNGAA--RNNTS 61
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 446 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLXY 574
TKL V N+ F + ++++LFS FG +KS + G+ Y
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGY 711
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = +3
Query: 582 VVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIRNNPK 761
V FE DA A+K +G LDG + ++LA + R GG GG+
Sbjct: 50 VEFEHSRDAEDAIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGG---GGSGYGGGG 106
Query: 762 RGGGGIR 782
GGG R
Sbjct: 107 GGGGSAR 113
>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 478
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Frame = +2
Query: 197 KKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQR----GRNRGGITKSTNYSRGDVN 364
KK + G G +K A K+ G GG GGVQ + GG TK + D++
Sbjct: 239 KKGKSGNGDEKK-SAGKKDGHGGNKVKSHGGGGGVQHYDSGPKKGGGGTKGGGHGGLDID 297
Query: 365 STWKHDMFNDFGERKLQRN 421
KH G K N
Sbjct: 298 ELMKHSKGGGGGGNKGNHN 316
>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 577
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Frame = +2
Query: 197 KKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQR----GRNRGGITKSTNYSRGDVN 364
KK + G G +K A K+ G GG GGVQ + GG TK + D++
Sbjct: 338 KKGKSGNGDEKK-SAGKKDGHGGNKVKSHGGGGGVQHYDSGPKKGGGGTKGGGHGGLDID 396
Query: 365 STWKHDMFNDFGERKLQRN 421
KH G K N
Sbjct: 397 ELMKHSKGGGGGGNKGNHN 415
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2
Query: 353 GDVNSTWKHDMFNDFGERKLQRNSGTITTG--PTK-LLVSNLDFGVSDSDIKELFSEFGI 523
GD+ S+ H GER + G + G P++ LLV N+ V D ++K LF +FG
Sbjct: 187 GDIFSSVSHRN----GERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGD 242
Query: 524 LKS 532
+++
Sbjct: 243 IQA 245
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/56 (37%), Positives = 24/56 (42%)
Frame = +2
Query: 206 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTW 373
R GG R+ + R G GGG G S+ GG G G S Y G V S W
Sbjct: 557 RFGGRDFRREGSYSRGGGGGGGGGGSDYYGGGGYGGGGYGGAPSGGYGAG-VTSAW 611
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/56 (37%), Positives = 24/56 (42%)
Frame = +2
Query: 206 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTW 373
R GG R+ + R G GGG G S+ GG G G S Y G V S W
Sbjct: 557 RFGGRDFRREGSYSRGGGGGGGGGGSDYYGGGGYGGGGYGGAPSGGYGAG-VTSAW 611
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 446 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRS 556
T L + NLD VS+ ++E F+EFG + S ++ D +
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDEN 237
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +2
Query: 446 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 565
+ + V N++ V++ ++++ FS+ G + S + D G+S
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKS 343
>At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protein
contains Pfam PF00641: Zn-finger in Ran binding protein
and others; contains Prosite PS00018: EF-hand
calcium-binding domain; similar to Zinc finger protein
265 (Zinc finger, splicing) (Fragment). (SP:Q9R020){Mus
musculus}
Length = 849
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 215 GGAGRKFDANKRTGRGGGAGFRSNRSG-GVQRGRNRGGITKSTNYSRGDVNST 370
GG +FD GRG G+ SNR G G G NR G + + GD ++
Sbjct: 791 GGFDDEFDRKSSRGRGSGSFRGSNRGGRGGGGGGNRHGHSDGKDTDVGDFRNS 843
>At1g04800.1 68414.m00476 glycine-rich protein
Length = 200
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +2
Query: 209 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITK 334
+ GGAG+ FD G GGAG GGV +G GGI K
Sbjct: 119 VDGGAGKGFDGGVGKGVDGGAG--KGFDGGVGKG-FEGGIGK 157
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 355
GGGAG+ D G GGAG GG +G + GG+ K + G
Sbjct: 96 GGGAGKGVDGGFGKGVDGGAG--KGVDGGAGKGFD-GGVGKGVDGGAG 140
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 377 HDMFNDFGERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD 550
H +FN LQ + G + K+ V L V++++ K+ F++FG++ V YD
Sbjct: 13 HVVFNK-SNSSLQGSPGP--SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYD 67
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 377 HDMFNDFGERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD 550
H +FN LQ + G + K+ V L V++++ K+ F++FG++ V YD
Sbjct: 86 HVVFNK-SNSSLQGSPGP--SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYD 140
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 377 HDMFNDFGERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD 550
H +FN LQ + G + K+ V L V++++ K+ F++FG++ V YD
Sbjct: 86 HVVFNK-SNSSLQGSPGP--SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYD 140
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 434 TTGPTKLLVSNLDFGVSDSDIKELFSEFGILK 529
++GP+ LL+ NL +D+++ F FG LK
Sbjct: 43 SSGPSGLLIRNLPLDARPNDLRDSFERFGPLK 74
>At4g30460.1 68417.m04325 glycine-rich protein
Length = 162
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 355
G G+G + + + G GGG G GG RG GG Y G
Sbjct: 104 GSGSGGRSGSGRGRGSGGGGGHGGGGGGGGGRG-GGGGSGNGEGYGEG 150
>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
identical to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 355
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = +2
Query: 179 DIIKANKKTRIGGGAGRKFDANKRTGRGGG-AGFRSNRSGGVQRGR----NRGGITKSTN 343
D+ K++ + R GGGA R + G GGG G SN G +R R R G + ++
Sbjct: 103 DVSKSSYERRGGGGAPRGSFRGEGGGPGGGRRGGFSNEGGDGERPRRAFERRSGTGRGSD 162
Query: 344 YSR-GDVNSTW 373
+ R G W
Sbjct: 163 FKRDGSGRGNW 173
>At2g15780.1 68415.m01809 glycine-rich protein similar to Blue
copper protein precursor (SP:Q41001) {Pisum sativum};
contains a Pfam PF02298: Plastocyanin-like domain
related to blue copper-binding protein; contains a
domain related to blue copper-binding protein
Length = 257
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFN 391
G G G + + + G G GF S+R+G G GG+ +T +S G S W N
Sbjct: 55 GWGQGSNYSSGSASTPGSGWGFGSSRNGS-GWGWGWGGVPNNT-HSSGSGGSGWGMGPNN 112
Query: 392 DFGERKLQRNSG 427
++ SG
Sbjct: 113 NYSSGSGGSGSG 124
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRG--GGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNST 370
GGG G ++ R+G G GG G S RSGG G G S+ YS G S+
Sbjct: 517 GGGYGSYGSSSGRSGGGSYGGYGGSSGRSGG-GGGSYGGSGGSSSRYSGGSDRSS 570
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 446 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 565
T + V NL V+D + LFS++G + S V D GRS
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRS 241
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 446 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 565
+ L V NL ++++ ++E+F +G + SA V +GRS
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRS 343
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGR--GGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDM 385
GG AG +G GGG G+ SN GG G GG+ S N+++G + D
Sbjct: 172 GGNAGGYGGNPPYSGNAVGGGGGYGSNFGGGGGYG-VAGGVGGSENFAQGSSTNAGFDDK 230
Query: 386 F 388
F
Sbjct: 231 F 231
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 449 KLLVSNLDFGVSDSDIKELFSEFGILKSASV 541
KL V L VS+++++ LFSE+G +K +
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQI 140
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 449 KLLVSNLDFGVSDSDIKELFSEFGILKSASV 541
KL V L VS+++++ LFSE+G +K +
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQI 131
>At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear
antigen EBNA-1 (GI:3342234) {Cercopithecine herpesvirus
15}
Length = 118
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGG--GAGFRSNRSGGVQRGRNRGGITKSTNYSRGD 358
G G+G +G G G+G + SGG GR GG RGD
Sbjct: 12 GSGSGGSVSGGSGSGGSGSGGSGSGGSGSGGRANGRGNGGRGSGRGGGRGD 62
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 720 GGASVGGTIRNNPKRGGGGIRNQSNSGARGGNXXXRGG 833
GG+ GG+ GG G ++N GG RGG
Sbjct: 21 GGSGSGGSGSGGSGSGGSGSGGRANGRGNGGRGSGRGG 58
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/84 (29%), Positives = 33/84 (39%)
Frame = +3
Query: 582 VVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIRNNPK 761
V F+ + A+++ NG LDGR + + A S + R GG G
Sbjct: 52 VTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSG 111
Query: 762 RGGGGIRNQSNSGARGGNXXXRGG 833
GGGG SG GG R G
Sbjct: 112 GGGGGY-----SGGGGGGYERRSG 130
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 355
GGG G + + GGG G+ GG G G +S Y G
Sbjct: 88 GGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGGGGGYERRSGGYGSG 135
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 449 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 565
+ V L + +D D++ FS+FG + + + DR SGRS
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRS 46
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 325
GGG G + G GGG G R GG + G GG
Sbjct: 119 GGGGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGG 156
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +2
Query: 134 FQIITMVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGR 313
F +T D E A+ D I+ + G +A R G GGG G R GG + G
Sbjct: 49 FGFVTFKD--EKAMRDAIEEMNGKELDGRVITVNEAQSR-GSGGGGGGRGGSGGGYRSGG 105
Query: 314 NRG 322
G
Sbjct: 106 GGG 108
>At4g27330.1 68417.m03921 sporocyteless (SPL) identical to
sporocyteless SPL (MADS-box related protein)
[Arabidopsis thaliana] gi|5566240|gb|AAD45344
Length = 314
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 651 RAMNIQLATSEINTLRPEARNRIGGAS-VGGTIRNNPKRGGGGIR 782
RA ++ +++ IN EA N G G + NP+ G GG++
Sbjct: 233 RAASVSASSTTINPYFNEATNHTGPMEEFGSYMEGNPRNGSGGVK 277
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 449 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRS 556
K+ V L V++SD K F +FG V YD +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 449 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRS 556
K+ V L V++SD K F +FG V YD +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
>At1g68640.1 68414.m07843 bZIP family transcription factor
(PERIANTHIA) identical to transcription factor
PERIANTHIA GB:AAD19660 GI:4378757 from [Arabidopsis
thaliana]
Length = 452
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Frame = +2
Query: 233 FDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI-----TKSTNYSRGDVNSTW 373
FD G GGG G R GG + + G + T+ G+VNS+W
Sbjct: 62 FDTVMDCGGGGGGGLRERLEGGEEECLDTGQLVYQKGTRLVGGGVGEVNSSW 113
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 440 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLXY 574
GP ++ V L + ++ I+EL FG L+ ++ DR +G S Y
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGY 418
>At1g36675.1 68414.m04563 glycine-rich protein
Length = 268
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 227 RKFDANKRT---GRGGGAGFRSNRSGGVQRGRNRGG 325
++F+A K+ G G G G R R GG GR GG
Sbjct: 185 KRFEATKKEDGRGNGRGGGSRDGRGGGSGDGRGIGG 220
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +3
Query: 711 NRIGGASVGGTIRNNPKRGGGGIRNQSNSGARGGNXXXRGG 833
N GG + GG+ R G G RN+S G RGG RGG
Sbjct: 371 NSRGGGNNGGS-RGRYFSGRGSFRNESFKGGRGGG--GRGG 408
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 714 RIGGASVGGTIRNNPKRGGGGIRN--QSNSGARGG-NXXXRGGA 836
R GG G +NP+ GG G + Q+ G RGG RGGA
Sbjct: 411 RGGGEFSGRPKSSNPRNGGEGYQRVPQNGGGGRGGRGEGGRGGA 454
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +3
Query: 711 NRIGGASVGGTIRNNPKRGGGGIRNQSNSGARGGNXXXRGG 833
N GG + GG+ R G G RN+S G RGG RGG
Sbjct: 370 NSRGGGNNGGS-RGRYFSGRGSFRNESFKGGRGGG--GRGG 407
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 714 RIGGASVGGTIRNNPKRGGGGIRN--QSNSGARGG-NXXXRGGA 836
R GG G +NP+ GG G + Q+ G RGG RGGA
Sbjct: 410 RGGGEFSGRPKSSNPRNGGEGYQRVPQNGGGGRGGRGEGGRGGA 453
>At5g45720.1 68418.m05621 hypothetical protein
Length = 900
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +2
Query: 119 KKYLEFQIITMVDQIEMA---LDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNR 289
KK E + T+ DQ+ DD++ N + R G RKF +R GR R N
Sbjct: 146 KKVNEAIVKTLSDQLNEVGGDSDDLVSCNVRPRGDGCRRRKFRGTRRAGR--AVNVRDNA 203
Query: 290 SG 295
+G
Sbjct: 204 AG 205
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 245 KRTGRGGGAGF-RSNRSGGVQRGRNRGGITKSTNYSRGDVNS 367
K +GRGGG GF S S + G GG T Y G + S
Sbjct: 23 KVSGRGGGGGFVGSGNSPSIGSGYFGGGGNPGTGYMGGGIPS 64
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 434 TTGP-TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR 553
++GP TKL VS L F ++ +++ F +FG L ++ D+
Sbjct: 72 SSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDK 112
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 452 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLXY 574
L V L+ D D+ +FS FG + SA V D ++G SL Y
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCY 286
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 206 RIGGGAGRKFDANK-RTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 355
R G G GR D + R G GGG G R GG RGR G + ++ RG
Sbjct: 497 RFGSGGGRGRDGGRGRFGSGGGRG----RDGG--RGRFGSGGGRGSDRGRG 541
>At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi
domain-containing protein similar to SP|O04379 Argonaute
protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
protein (ZWILLE protein) {Arabidopsis thaliana};
contains Pfam profiles PF02171: Piwi domain, PF02170:
PAZ domain
Length = 1013
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRG---GGAGFRSNRS---GGVQRGRNRGGITKSTNYSRG 355
GG G + D R GRG GG G R GG ++GR RG N +G
Sbjct: 4 GGYRGGRGDGRGRGGRGYGGGGGGGEQGRDRGYGGGEQGRGRGSERGGGNRGQG 57
>At1g07135.1 68414.m00759 glycine-rich protein
Length = 155
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 212 GGGAGRKFDANKRTG---RGGGAGFRSNRSGGVQRG 310
GGG G + R+G RGGG G S+RS +RG
Sbjct: 67 GGGGGGRGGGGARSGGRSRGGGGGSSSSRSRDWKRG 102
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 325
GGGA + G GGG + GG G GG
Sbjct: 244 GGGAAGGYGGGGGGGEGGGGSYGGEHGGGSGGGHGGGG 281
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 355
GGG G G GG G+ S GG G GG S Y+ G
Sbjct: 58 GGGYGGGSGEGAGGGYGGAEGYASG--GGSGHGGGGGGAASSGGYASG 103
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 325
GGG G G GG+G+ GG G + GG
Sbjct: 168 GGGHGGGGGGGSAGGAHGGSGYGGGEGGGAGGGGSHGG 205
>At5g20250.2 68418.m02411 raffinose synthase family protein / seed
imbibition protein, putative (din10) similar to seed
imbibition protein GB:AAA32975 GI:167100 from [Hordeum
vulgare]; contains nonconsensus AT donor splice site at
intron 1; contains Pfam profile PF05691: Raffinose
synthase or seed imbibition protein Sip1; identical to
cDNA seed imbibition protein (din10) partial cds
GI:10834551
Length = 749
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 293 GGVQRGRNRGGITKSTNYSRGDVNS--TWKHDM 385
GGV+ G G + K N S+G V + TWK D+
Sbjct: 315 GGVRPGEEYGSVMKYPNMSKGVVENDPTWKTDV 347
>At5g20250.1 68418.m02410 raffinose synthase family protein / seed
imbibition protein, putative (din10) similar to seed
imbibition protein GB:AAA32975 GI:167100 from [Hordeum
vulgare]; contains nonconsensus AT donor splice site at
intron 1; contains Pfam profile PF05691: Raffinose
synthase or seed imbibition protein Sip1; identical to
cDNA seed imbibition protein (din10) partial cds
GI:10834551
Length = 844
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 293 GGVQRGRNRGGITKSTNYSRGDVNS--TWKHDM 385
GGV+ G G + K N S+G V + TWK D+
Sbjct: 410 GGVRPGEEYGSVMKYPNMSKGVVENDPTWKTDV 442
>At4g29240.1 68417.m04182 leucine-rich repeat family protein /
extensin family protein contains Pfam PF00560: Leucine
Rich Repeat domains; similar to leucine-rich
repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana]
Length = 415
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +2
Query: 173 LDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSR 352
L +++ + +GGG G G GGG G GG G NR + S+ +R
Sbjct: 20 LGGLVQTDASFGVGGGVGVGIG-----GGGGGGGGGVWVGGGYNNGGNRNAVPGSSAPNR 74
Query: 353 GDVNS--TWKHDMFND 394
N+ WK M D
Sbjct: 75 VAYNALQVWKSAMRED 90
>At3g56250.1 68416.m06251 expressed protein
Length = 222
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 404 RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSAS 538
R++ + + + P++ S D GVSD D E +S + + + AS
Sbjct: 84 RRMSADLASPASAPSRPQTSRSDMGVSDKDFTEPWSVYTVRRKAS 128
>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
4B, putative/ eIF-4B, putative similar to eukaryotic
initiation factor 4B [Arabidopsis thaliana] GI:6739518
Length = 532
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = +2
Query: 173 LDDIIKANKKT--RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI---TKS 337
LDD ++ +K R G GAGR ++RT G+ + +R R+RG + +
Sbjct: 446 LDDKVRFRQKPVERPGSGAGRTGTYSERTHSRAGSIDETRSFESTERPRSRGAVDAWVRP 505
Query: 338 TNYSRGDVNSTWKHDMFND 394
N R + T + F++
Sbjct: 506 ANEQRRNFQGTKERGFFSN 524
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 437 TGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLXY 574
T TK+ V NL + + D++ F +FG + A+V + GRS Y
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGY 55
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 419 NSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLXY 574
N+ T T TK+ V L + ++ F +FG + A V D+ +GRS Y
Sbjct: 13 NNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGY 65
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 458 VSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLXY 574
V N D+ SD++ LFS+FG +K + +SG + Y
Sbjct: 6 VGNFDYDTRHSDLERLFSKFGRVKRVDM---KSGYAFVY 41
>At2g28670.1 68415.m03485 disease resistance-responsive family
protein / fibroin-related contains similarity to silk
fibroin heavy chain [Bombyx mori] gi|765323|gb|AAB31861;
contains disease resistance response protien domain
Pfam:FP03018
Length = 447
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +2
Query: 203 TRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 322
T IG GAG + TG G GAG S+ SG G G
Sbjct: 45 TGIGFGAGTGSSGSGSTGFGFGAGSGSSGSGSTGSGLGAG 84
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 458 VSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 565
V LD + D+ ++FS+FG + + + YDR +G+S
Sbjct: 11 VRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKS 47
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 404 RKLQRNSGTITTGP-TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLXY 574
+ +++N + P T + V+NL + ELF +FG +K + RS R L +
Sbjct: 265 KSIKKNDQKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQV-RSSRVLIF 321
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 206 RIGGGAGRKFDANKRTGRGGGAG 274
R GGG G +F GRGG G
Sbjct: 644 RFGGGGGNRFGGGGGRGRGGSGG 666
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 325
G G + G GGG G R GG Q G +RGG
Sbjct: 40 GASGGGSYGGRGGYGGGGGRGNRGGGGGGYQ-GGDRGG 76
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +3
Query: 723 GASVGGTIRNNPKRGGGGIRNQSNSGARGGNXXXRGG 833
GAS GG+ GGGG R G G RGG
Sbjct: 40 GASGGGSYGGRGGYGGGGGRGNRGGGGGGYQGGDRGG 76
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/58 (31%), Positives = 21/58 (36%)
Frame = +3
Query: 684 INTLRPEARNRIGGASVGGTIRNNPKRGGGGIRNQSNSGARGGNXXXRGGAXXXXXQY 857
+N R N+ G + GT RGGGG RGG RGG Y
Sbjct: 98 VNFARRVECNKCGALAPSGTSSGANDRGGGGYSRGGGDSDRGGG---RGGRNDSGRSY 152
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 325
G G + G GGG G R GG Q G +RGG
Sbjct: 40 GASGGGSYGGRGGYGGGGGRGNRGGGGGGYQ-GGDRGG 76
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +3
Query: 723 GASVGGTIRNNPKRGGGGIRNQSNSGARGGNXXXRGG 833
GAS GG+ GGGG R G G RGG
Sbjct: 40 GASGGGSYGGRGGYGGGGGRGNRGGGGGGYQGGDRGG 76
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/58 (31%), Positives = 21/58 (36%)
Frame = +3
Query: 684 INTLRPEARNRIGGASVGGTIRNNPKRGGGGIRNQSNSGARGGNXXXRGGAXXXXXQY 857
+N R N+ G + GT RGGGG RGG RGG Y
Sbjct: 98 VNFARRVECNKCGALAPSGTSSGANDRGGGGYSRGGGDSDRGGG---RGGRNDSGRSY 152
>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 587
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 720 GGASVGGTIRNNPKRGGGGIRNQSNSGARGGNXXXRGG 833
GG GG + P GGG + NQ+ G GG +GG
Sbjct: 315 GGGGPGGK-KGGPGGGGGNMGNQNQGG--GGKNGGKGG 349
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 449 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 565
+ V L + +D D++ FS+FG + + + DR SGRS
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRS 46
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 449 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 565
+ V L + +D D++ FS+FG + + + DR SGRS
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRS 46
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 449 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 565
+ V L + +D D++ FS+FG + + + DR SGRS
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRS 46
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/77 (28%), Positives = 31/77 (40%)
Frame = +3
Query: 582 VVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIRNNPK 761
V F+ + A+++ NG LDGR + + A S + GG GG+
Sbjct: 52 VTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR--------GSGGGGGGRGGSGGGYRS 103
Query: 762 RGGGGIRNQSNSGARGG 812
GGGG G GG
Sbjct: 104 GGGGGYSGGGGGGYSGG 120
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +2
Query: 134 FQIITMVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGR 313
F +T D E A+ D I+ + G +A R G GGG G R GG + G
Sbjct: 49 FGFVTFKD--EKAMRDAIEEMNGKELDGRVITVNEAQSR-GSGGGGGGRGGSGGGYRSGG 105
Query: 314 NRG 322
G
Sbjct: 106 GGG 108
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 212 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 325
GGG G + + GGG G+ GG G GG
Sbjct: 88 GGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGGGGGG 125
>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
Length = 320
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +2
Query: 254 GRGGGAGFRSNRSGGVQRGRNRGG 325
GRGGG GF G RG RGG
Sbjct: 38 GRGGGRGFSDRGGRGRGRGPPRGG 61
>At3g10040.1 68416.m01204 expressed protein est match
Length = 431
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2
Query: 218 GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG-DVNSTWKHDMFND 394
G DA K+TG GGG G GG+ + + + +G V+ D FND
Sbjct: 126 GLNDPVDAKKKTGGGGGGG----GGGGMLQKKGKWKSVSRAMVEKGFSVSPQQCEDKFND 181
Query: 395 FGER 406
+R
Sbjct: 182 LNKR 185
>At3g06130.1 68416.m00704 heavy-metal-associated domain-containing
protein contains Pfam heavy metal associated domain
PF00403
Length = 473
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +2
Query: 182 IIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG---RNRGG 325
++ A K + GG + GGGAG GG + G +N+GG
Sbjct: 239 MMNAQKNANLAGGPAKNGGKGAPAAGGGGAGGGKGAGGGAKGGPGNQNQGG 289
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 699 PEARNRIGGASVGGTIRNNPKRGGGGIRNQSNSGARGGNXXXRGG 833
P +N+ GG + GG + K GGGG + GG GG
Sbjct: 282 PGNQNQGGGKNGGGGHPQDGKNGGGGGGPNAGKKGNGGGGPMAGG 326
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +2
Query: 197 KKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 325
K + G G N +G GG +G R GG RG RGG
Sbjct: 74 KAIEVSGPDGAPVQGN--SGGGGSSGGRGGFGGGGGRGGGRGG 114
>At2g05540.1 68415.m00586 glycine-rich protein
Length = 135
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Frame = +3
Query: 723 GASVGGTIRNNPKRG----GGGIRNQSNS-GARGGNXXXRGG 833
G GG NP G GGG RN+ G RGG RGG
Sbjct: 56 GGFPGGGYGGNPGGGYGNRGGGYRNRDGGYGNRGGGYGNRGG 97
>At1g72080.1 68414.m08332 hypothetical protein
Length = 243
Score = 28.3 bits (60), Expect = 7.1
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +2
Query: 134 FQIITMVDQIEMALDD--IIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQR 307
F I + + M ++ I ++ R G G + R GRG G G R G R
Sbjct: 85 FATINTEEHLTMQIESPSTIINTEERRAGDDDGSRSRGRGR-GRGRGRGRGRGRGRGRGR 143
Query: 308 GRNRGGITKSTNYSRG 355
GRNR ++S ++S G
Sbjct: 144 GRNRSR-SRSPSHSNG 158
>At1g20220.1 68414.m02525 expressed protein
Length = 315
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 215 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 355
GG G + N+ G G G R SG V N GG+ + +Y RG
Sbjct: 186 GGRGNGYVNNEYDDGGRGRGGRG--SGYVNNEYNDGGMEQDRSYGRG 230
>At5g10740.1 68418.m01245 protein phosphatase 2C-related /
PP2C-related protein phosphatase 2C, alfalfa, PIR:T09640
Length = 354
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 281 SNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFNDFGERKLQRNSGTI 433
SN+ V+ + GG++++ +S G +S K DF E ++ +G I
Sbjct: 11 SNQPQTVEAPASGGGLSQNGKFSYGYASSAGKRSSMEDFFETRIDGINGEI 61
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 449 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRS-GRS 565
KL+V + + + +K+ S+FG L+ V DRS GRS
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRS 43
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 449 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRS 556
K+ V L +++++ K F +FG + V YD +
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHN 158
>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
protein
Length = 313
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 446 TKLLVSNLDFGVSDSDIKELFSEFG 520
T + VSN+ G +D D+KE FS G
Sbjct: 4 TTVKVSNVSLGATDRDLKEFFSFSG 28
>At2g44370.1 68415.m05519 DC1 domain-containing protein highly
similar to GP|2435515|AF024504
Length = 250
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +3
Query: 756 PKRGGGGIRNQSNSGARGGNXXXRGGA 836
PKRGGG R + S GGN RG A
Sbjct: 185 PKRGGGSARGNTKS---GGNKGGRGSA 208
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 768 GGGIRNQSNSGARGGNXXXRGG 833
GG IR+QSN+G GG GG
Sbjct: 150 GGEIRDQSNNGGGGGGGGGGGG 171
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 443 PTKLLVSNLDFGVSDSDIKELFSEFGILK 529
PT LLV NL D+++ F +FG +K
Sbjct: 35 PTSLLVRNLRHDCRQEDLRKSFEQFGPVK 63
>At1g51460.1 68414.m05792 ABC transporter family protein similar to
SP|Q9UNQ0 ATP-binding cassette, sub-family G, member 2
(Placenta-specific ATP- binding cassette transporter)
(Breast cancer resistance protein) {Homo sapiens};
contains Pfam profile PF00005: ABC transporter
Length = 678
Score = 27.9 bits (59), Expect = 9.4
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +1
Query: 439 WSYQAACIQFGLWSIRFRYKGTIFGI 516
W Y + I +G W+++ YK + G+
Sbjct: 545 WRYPVSYINYGAWALQGAYKNEMIGV 570
>At1g27090.1 68414.m03302 glycine-rich protein
Length = 420
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 194 NKKTRIGGGAGRKFDANKRTGRGGGAGFRSNR 289
N++ R G G N R GRGGG G+++ R
Sbjct: 341 NQRGRRGARRGGGGYQNGRGGRGGGGGYQNGR 372
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 446 TKLLVSNLDFGVSDSDIKELFSEFGILKSASV 541
T++ V NLD V++ ++++ F FG+L++ V
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWV 33
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 446 TKLLVSNLDFGVSDSDIKELFSEFGILKSASV 541
T++ V NLD V++ ++++ F FG+L++ V
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWV 33
>At1g19870.1 68414.m02492 calmodulin-binding family protein contains
Pfam profile: PF00612 IQ calmodulin-binding motif
Length = 794
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 174 WMIL*KPTKRQGLEVVLEE-NLMQTKEQDVEAVLDFVATALVVYNEVE 314
WM + KP K + EE NL +T+ + DFV + V N+ E
Sbjct: 339 WMSVPKPEKTSKANLTTEEQNLEETQNVKISPQADFVNSDSTVENKTE 386
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,739,229
Number of Sequences: 28952
Number of extensions: 362692
Number of successful extensions: 2113
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1959
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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