Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N01
         (867 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)                      62   8e-10
SB_20596| Best HMM Match : DUF1237 (HMM E-Value=6.4)                   29   4.9  
SB_57805| Best HMM Match : Myotub-related (HMM E-Value=4.2)            28   8.6  

>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
          Length = 1264

 Score = 61.7 bits (143), Expect = 8e-10
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
 Frame = +2

Query: 440 YFITSMFR-QPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQEFNTNF-DNSNL 613
           +F+T++FR +   P +D  +PS     PA N+F     +++Y YLSE     NF D  +L
Sbjct: 74  WFVTNLFRGKQQQPSSD--SPSGMSLKPATNLFNTNQKMELYVYLSELSNFQNFEDKGSL 131

Query: 614 IWQHSGLVYGDWYSGPNGDGSYSHSASITPS 706
           IW    L +G+W  GP  DG +  S  +  S
Sbjct: 132 IWHQKDLQFGNWTDGPAKDGVFMFSTQLKTS 162



 Score = 32.3 bits (70), Expect = 0.53
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 718 NNGSIYLHVYIVPSGKSPD 774
           NNGS+Y HVYI   GK+P+
Sbjct: 167 NNGSLYAHVYITKIGKNPN 185



 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 295  HDGSSVVAADDNLDINARVEEERRRMQPTKLESFFAITKSLIIRALXSLFYYFYV*TAIC 474
            HDG++++AA D      + E ERR M  T      ++T   +I  L     Y Y  +A+ 
Sbjct: 1052 HDGNAIIAAAD-----VKAEMERRNMSMTTHPRQASVTLCPVITTLYYCCLYHYQDSALS 1106

Query: 475  SK 480
             K
Sbjct: 1107 DK 1108


>SB_20596| Best HMM Match : DUF1237 (HMM E-Value=6.4)
          Length = 526

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 126 KPVKHYVIVNEISSSHTIKCKLVKL 200
           K   HYVI     +SHT+KC+L+ L
Sbjct: 183 KVAAHYVIQVPSGNSHTLKCRLMSL 207


>SB_57805| Best HMM Match : Myotub-related (HMM E-Value=4.2)
          Length = 167

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +3

Query: 114 TYNLKPVKHYVIVNEISSSHTIKCKLVKLFFC--YH 215
           TY+  P+ H    + +  SH + C  + + FC  YH
Sbjct: 31  TYHTLPISHCATYHTLPISHCVTCHTLPISFCATYH 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,130,695
Number of Sequences: 59808
Number of extensions: 451203
Number of successful extensions: 970
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)