Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_N01
(867 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23575.1 68418.m02766 transmembrane protein, putative similar... 43 3e-04
At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein con... 43 3e-04
At3g04160.1 68416.m00440 expressed protein ; expression supporte... 32 0.43
At1g70450.1 68414.m08105 protein kinase family protein contains ... 29 3.0
At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative ... 29 5.3
At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)... 28 7.0
At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)... 28 7.0
At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E... 28 7.0
At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E... 28 7.0
At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E... 28 7.0
At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa ... 28 7.0
At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa ... 28 7.0
At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)... 28 7.0
At2g01275.1 68415.m00041 zinc finger (C3HC4-type RING finger) fa... 28 7.0
At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative ... 28 9.3
At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative ... 28 9.3
At4g22970.1 68417.m03315 peptidase C50 family protein contains P... 28 9.3
>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
cleft lip and palate transmembrane protein 1 [Homo
sapiens] GI:4039014; contains Pfam profile PF05602:
Cleft lip and palate transmembrane protein 1 (CLPTM1)
Length = 593
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 440 YFITSMFRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQEFNTNFDNSN-LI 616
YF + F +PK +P+ AP N+F G LDM+ YLSEQE +F N L
Sbjct: 43 YFASKFF----SPKQKPMDPT-APSQLMTNLFHKGESLDMWFYLSEQEKFNDFGNDRALY 97
Query: 617 WQHSGLVYGDW 649
W + + Y W
Sbjct: 98 WHETNIPYAVW 108
>At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein
contains Pfam profile PF05602: Cleft lip and palate
transmembrane protein 1 (CLPTM1)
Length = 590
Score = 42.7 bits (96), Expect = 3e-04
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Frame = +2
Query: 440 YFITSMFRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQEFNTNFDNSN-LI 616
YF + F +PK +PS P N+F G +DM+ YLSE E +F N LI
Sbjct: 41 YFASKFF----SPKQKPADPSK-PTHLMSNLFQRGEPIDMWFYLSEHEKFNDFGNEGALI 95
Query: 617 WQHSGLVYGDWYSGPNGDGSYSHSASITPSFALKIMDPFIYMFILYLLGNHRI 775
W + + Y W + + + S + PS ALK + +Y + + L + I
Sbjct: 96 WHETNIPYAVW----KPESTRTLSMTYYPSEALK-NNGSLYAHVFFALSGYPI 143
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 712 VKNNGSIYLHVYIVPSGKSPDLT 780
+KNNGS+Y HV+ SG DL+
Sbjct: 124 LKNNGSLYAHVFFALSGYPIDLS 146
>At3g04160.1 68416.m00440 expressed protein ; expression supported
by MPSS
Length = 712
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 458 FRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQEFNTNFDNSNLIWQHSGLV 637
FR P P + NN S P P + + GT+ + LSE + + + NL HS L+
Sbjct: 32 FRPPPPPLQNPNNYSIVPSPPPIRELS-GTLSSLKSLLSECQRTLDSLSQNLALDHSSLL 90
Query: 638 YGD 646
D
Sbjct: 91 QKD 93
>At1g70450.1 68414.m08105 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 394
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +2
Query: 479 KTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQEFNTNFDNSNLIWQHSGLVYGDWYSG 658
K ++PSS+P AP+V+ G+ + Y ++ F N++ + +G Y G
Sbjct: 10 KETADSPSSSPTAPSVDSAVMGSGQTHFTYEELEDITEGFSKQNILGEGG---FGCVYKG 66
Query: 659 PNGDG 673
DG
Sbjct: 67 KLKDG 71
>At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative
identical or nearly so to Ubiquitin-conjugating enzymes
SP|P35132, SP|P35131, SP|P35133 from {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 712 VKNNGSIYLHVYIVPSGKSPDLTIDKTLLALTSLL 816
V +NGSI L I+ SP LTI K LL++ SLL
Sbjct: 78 VNSNGSICLD--ILKEQWSPALTISKVLLSICSLL 110
>At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 712 VKNNGSIYLHVYIVPSGKSPDLTIDKTLLALTSLL 816
+ +NGSI L I+ SP LTI K LL++ SLL
Sbjct: 78 INSNGSICLD--ILKEQWSPALTISKVLLSICSLL 110
>At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 712 VKNNGSIYLHVYIVPSGKSPDLTIDKTLLALTSLL 816
+ +NGSI L I+ SP LTI K LL++ SLL
Sbjct: 78 INSNGSICLD--ILKEQWSPALTISKVLLSICSLL 110
>At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 149
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 712 VKNNGSIYLHVYIVPSGKSPDLTIDKTLLALTSLL 816
+ +NGSI L I+ SP LTI K LL++ SLL
Sbjct: 79 INSNGSICLD--ILKEQWSPALTISKVLLSICSLL 111
>At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 712 VKNNGSIYLHVYIVPSGKSPDLTIDKTLLALTSLL 816
+ +NGSI L I+ SP LTI K LL++ SLL
Sbjct: 78 INSNGSICLD--ILKEQWSPALTISKVLLSICSLL 110
>At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 712 VKNNGSIYLHVYIVPSGKSPDLTIDKTLLALTSLL 816
+ +NGSI L I+ SP LTI K LL++ SLL
Sbjct: 78 INSNGSICLD--ILKEQWSPALTISKVLLSICSLL 110
>At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 178
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 712 VKNNGSIYLHVYIVPSGKSPDLTIDKTLLALTSLL 816
+ +NGSI L I+ SP LTI K LL++ SLL
Sbjct: 108 INSNGSICLD--ILKEQWSPALTISKVLLSICSLL 140
>At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 148
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 712 VKNNGSIYLHVYIVPSGKSPDLTIDKTLLALTSLL 816
+ +NGSI L I+ SP LTI K LL++ SLL
Sbjct: 78 INSNGSICLD--ILKEQWSPALTISKVLLSICSLL 110
>At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)
E2; identical to gi:12643427, SP:P35134
Length = 148
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 712 VKNNGSIYLHVYIVPSGKSPDLTIDKTLLALTSLL 816
+ +NGSI L I+ SP LTI K LL++ SLL
Sbjct: 78 INSNGSICLD--ILKEQWSPALTISKVLLSICSLL 110
>At2g01275.1 68415.m00041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 259
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 689 LSDCMIHHHSDLNTNLHTPNHCAAKL 612
+++C I H DL++N+ TP C+ +
Sbjct: 56 MAECRICHDEDLDSNMETPCSCSGSV 81
>At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 712 VKNNGSIYLHVYIVPSGKSPDLTIDKTLLALTSLL 816
+ +NGSI L I+ SP LT+ K LL++ SLL
Sbjct: 78 INSNGSICLD--ILKEQWSPALTVSKVLLSICSLL 110
>At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 712 VKNNGSIYLHVYIVPSGKSPDLTIDKTLLALTSLL 816
+ +NGSI L I+ SP LT+ K LL++ SLL
Sbjct: 78 INSNGSICLD--ILKEQWSPALTVSKVLLSICSLL 110
>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
PF03568: Peptidase family C50
Length = 1773
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 604 FKFNLAAQWFGVWRLVFRSEW 666
F NL A W G WR + EW
Sbjct: 1410 FLRNLEASWLGPWRCLLLGEW 1430
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,248,993
Number of Sequences: 28952
Number of extensions: 325041
Number of successful extensions: 763
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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