Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_M23
(873 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15580.1 68418.m01824 expressed protein unknown protein F14P3... 31 1.3
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 30 1.8
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 30 1.8
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 29 3.1
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 29 3.1
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb... 29 4.1
At5g45050.2 68418.m05524 disease resistance protein-related simi... 29 5.4
At5g45050.1 68418.m05523 disease resistance protein-related simi... 29 5.4
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 29 5.4
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 29 5.4
At3g20830.1 68416.m02634 protein kinase family protein contains ... 28 7.1
At1g71220.1 68414.m08219 UDP-glucose:glycoprotein glucosyltransf... 28 7.1
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 28 7.1
At5g54050.1 68418.m06722 DC1 domain-containing protein 28 9.4
>At5g15580.1 68418.m01824 expressed protein unknown protein F14P3.18
- Arabidopsis thaliana, EMBL:AC009755
Length = 927
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -3
Query: 718 KRHASRREKGGQVSGKRQG-SEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGG 542
K+ + +K K++G S + S+R SF S F+++D+S Q G
Sbjct: 66 KKETEKSKKKKTAKEKQRGVSSESSSRLSFSSSPCS-----SSFSSADISTTASQFEQPG 120
Query: 541 GAYGKTPATRPFYGSWPFAGLLL 473
+ G+ P P GS + GL++
Sbjct: 121 LSNGENPVREPTNGSPRWGGLMM 143
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 30.3 bits (65), Expect = 1.8
Identities = 27/63 (42%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 535 RLRPPDEHHKNRRSSQ-RWRNPTGL*RYQAFPPGSSLVRSPV-PTPAAYRIPVRLSPFGK 708
R R PD H+ R S R R T R A P S RSP P P YR P R SP
Sbjct: 235 RRRSPDSPHRRRPGSPIRRRGDTPPRRRPASP---SRGRSPSSPPPRRYRSPPRGSPRRI 291
Query: 709 RGA 717
RG+
Sbjct: 292 RGS 294
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 30.3 bits (65), Expect = 1.8
Identities = 27/63 (42%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 535 RLRPPDEHHKNRRSSQ-RWRNPTGL*RYQAFPPGSSLVRSPV-PTPAAYRIPVRLSPFGK 708
R R PD H+ R S R R T R A P S RSP P P YR P R SP
Sbjct: 242 RRRSPDSPHRRRPGSPIRRRGDTPPRRRPASP---SRGRSPSSPPPRRYRSPPRGSPRRI 298
Query: 709 RGA 717
RG+
Sbjct: 299 RGS 301
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = -3
Query: 592 FATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLS 413
F S S+D+ YG A P YGS P G+ + YP + + P++
Sbjct: 138 FGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPVT 197
Query: 412 ELIPL 398
PL
Sbjct: 198 GYAPL 202
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -3
Query: 451 PLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NAEKTSH 278
P+ L IT++PP + + A++P + N+L P+ R I AEK +H
Sbjct: 264 PVKLKITIIPPKARRTIPSEADKPTHTDELN-------FMNKLPPKRRRTIPSEAEKPTH 316
Query: 277 TSPLNLKHKM 248
T LN +K+
Sbjct: 317 TDELNFMNKL 326
>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
(RbohA) / NADPH oxidase identical to respiratory burst
oxidase protein A from Arabidopsis thaliana [gi:3242781]
Length = 902
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 541 RPPDEHHKNRRSSQRW 588
RPPDEH NR S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 350 PLPRSLTRCARSFGCGERYQLTQRR 424
P PRS RCA S GC R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 350 PLPRSLTRCARSFGCGERYQLTQRR 424
P PRS RCA S GC R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 678 PVSGRGRNRRAHEGASRGKRL 616
P+ GRGR R GA RG+R+
Sbjct: 1529 PIRGRGRGRSRGRGAGRGRRV 1549
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 678 PVSGRGRNRRAHEGASRGKRL 616
P+ GRGR R GA RG+R+
Sbjct: 1529 PIRGRGRGRSRGRGAGRGRRV 1549
>At3g20830.1 68416.m02634 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 408
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 341 PIRKPPLPARWPIH*CRKNLPHL 273
P PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406
>At1g71220.1 68414.m08219 UDP-glucose:glycoprotein
glucosyltransferase, putative similar to
UDP-glucose:glycoprotein glucosyltransferase precursor
GB:Q09332 [SP|Q09332] from Drosophila melanogaster,
[gi:7670746] and [gi:11346464] from Homo sapiens
Length = 1673
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 691 GGQVSGKRQGSEQESARGSFQGETPGIFIVLSG 593
GG+ + G ++E +G QG+T IF + SG
Sbjct: 1319 GGRQQSMKGGPDKEHEKGGRQGKTINIFSIASG 1351
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = -3
Query: 592 FATSDLSVDFCDARQGG-GAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPL 416
F S S+D+ Q YG A P YGS P G+ + YP + + P+
Sbjct: 138 FGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPV 197
Query: 415 SELIPL 398
+ PL
Sbjct: 198 TGYAPL 203
>At5g54050.1 68418.m06722 DC1 domain-containing protein
Length = 580
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 740 YLSSGVCR-SLQLGCVHEPPPI 802
+L +C SL +GCV EPPP+
Sbjct: 133 FLRCTICNISLHIGCVAEPPPL 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,365,803
Number of Sequences: 28952
Number of extensions: 396805
Number of successful extensions: 1242
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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