Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M21
         (885 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47653| Best HMM Match : zf-CCHC (HMM E-Value=0.0017)                30   2.9  
SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)                    29   5.0  
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   29   5.0  
SB_4182| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_4180| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_23758| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_30178| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_47653| Best HMM Match : zf-CCHC (HMM E-Value=0.0017)
          Length = 759

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 312 CNRFWYMRPTPESYTYTGCTRGVRSELVVGRCIV 211
           C  +W M+   ES    GC +G RS+L   +CI+
Sbjct: 74  CKAYWQMKLAEESRD--GCRQGGRSKLGASKCII 105


>SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)
          Length = 822

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 876 SGWEKVPLISGPTPNTTIGAYLSKQGFSGVLSSIGSISEW 757
           S W + P +S P+PN+      SK   S ++ +  S + W
Sbjct: 79  STWLQFPFVSNPSPNSVEAVTSSKASVSTLVGTAPSSTRW 118


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 292  AAHTGVVHVHRLHQGRTLRASGRTLHRGKSKGNSSCINYLNNH 164
            A H+G  H      G+ +R       RGKS G ++C  Y  NH
Sbjct: 1628 ANHSGQTHASGT--GQIIRDKHMQQVRGKSSGTNTCSRYRTNH 1668



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 292  AAHTGVVHVHRLHQGRTLRASGRTLHRGKSKGNSSCINYLNNHS 161
            A H G    H    G+ +R       RGKS G ++C  Y  NHS
Sbjct: 1590 ANHPG--QTHAAGTGQIIRDKHMQQVRGKSSGTNTCSRYGANHS 1631


>SB_4182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 387 ISLRACSMTLKMKMVRRHCQRRPRLSR*SYHLMFH 491
           ++ R  +     + V +HC+R+PR S  SY+ MFH
Sbjct: 24  VNYRVYNQARWQEYVLKHCRRKPRPS--SYYAMFH 56


>SB_4180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 387 ISLRACSMTLKMKMVRRHCQRRPRLSR*SYHLMFH 491
           ++ R  +     + V +HC+R+PR S  SY+ MFH
Sbjct: 181 VNYRVYNQARWQEYVLKHCRRKPRPS--SYYAMFH 213


>SB_23758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 226 RTLHRGKSKGNSSCINYLNNHSHKRSIINN 137
           +TLH G SK  +S +  LN+H  K S + N
Sbjct: 220 QTLHYGSSKEKASVLRNLNSHLGKSSFLCN 249


>SB_30178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
 Frame = +3

Query: 198 PFDLPRCSVRPL--ARSVRPWCSRCTCTTPVWAAYTRSDYST-----FNVPYALYSSPSS 356
           P+ +  C+   +  AR    + +RCT    V   YT  +Y+T       VPY L+  P+S
Sbjct: 101 PYTMLECATSTIHDARVCYEYHTRCTSALRV--PYTMHEYNTRCTSALRVPYTLHECPTS 158

Query: 357 GFH 365
             H
Sbjct: 159 TIH 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,721,003
Number of Sequences: 59808
Number of extensions: 566217
Number of successful extensions: 1683
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)