Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M21
         (885 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containi...    29   3.1  
At4g00450.1 68417.m00062 expressed protein                             28   7.2  
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si...    28   7.2  
At4g28570.1 68417.m04087 alcohol oxidase-related low similarity ...    28   9.5  

>At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 852

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 452 SSLTVSPYHFHFQCHRTRPQRDYRTRS 372
           SS   +P+H H +C+ T P+ + +T+S
Sbjct: 11  SSAITNPHHHHRRCYATAPESNRKTKS 37


>At4g00450.1 68417.m00062 expressed protein
          Length = 2124

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +1

Query: 553  SYSGL*KIKNRHRGHGSRL-QKRKSMMQC 636
            S+ G+ + KNRH+G+G++L  K  S++ C
Sbjct: 1549 SHEGVSEAKNRHQGNGTKLVDKLVSVLDC 1577


>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative
           similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
           helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain, PF00575: S1 RNA binding domain
          Length = 1168

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 585 PPWSRKPPTKEEIDDAVLKGKAALKELIKVENLRKPLKRD 704
           PP  +    KEE DD   KG A      KV+ L K ++R+
Sbjct: 78  PPKPKSEKKKEEGDDQKFKGLAIKDTKDKVKELEKEIERE 117


>At4g28570.1 68417.m04087 alcohol oxidase-related low similarity to
           long chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]
          Length = 748

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 650 CFKGTDKSG-ESSEATEERRPRQQG 721
           C  GT++S  + SEA E+RRP ++G
Sbjct: 178 CIDGTERSSNKKSEADEKRRPLEKG 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,481,383
Number of Sequences: 28952
Number of extensions: 386822
Number of successful extensions: 1288
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)