Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_M18
(897 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.015
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 30 2.9
SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 3.9
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1) 29 5.1
SB_39697| Best HMM Match : ER_lumen_recept (HMM E-Value=1.4) 28 8.9
SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_24921| Best HMM Match : Pyr_redox (HMM E-Value=4.7e-15) 28 8.9
SB_9087| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 37.5 bits (83), Expect = 0.015
Identities = 22/61 (36%), Positives = 27/61 (44%)
Frame = -2
Query: 389 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHHF 210
R+ SR R +R P R +R P P S R RS +PR R+ SR RR
Sbjct: 225 RSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSPTHRRHRSRS 284
Query: 209 H 207
H
Sbjct: 285 H 285
>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = -2
Query: 380 SRDIRTTTEARRPGTARNTRRPKPTELSACCR----ERSETPRHRNKPSRPVWSRRSPHH 213
+RD R T R P ++ R P+P++ R +R P + + RP +R P H
Sbjct: 191 NRDTRDTINNRHPRPSQQQRHPRPSQQQRHPRPSQQQRYPRPSQQQRQPRPSQQQRYPRH 250
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 411 RSPL-RAVQSREQGHQDHHRGPAPRHSEKHSASEADRAER 295
R+PL R +SR H+DH PR S HS D ER
Sbjct: 200 RTPLKRRSRSRSLRHEDHDDA-TPRRSRSHSLRHEDEEER 238
>SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +2
Query: 182 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLGAGPL 358
++ +S+Y ++++ + ++++Y + P S +A SD FSLC+ GPL
Sbjct: 137 NTRLSEYLESRDCEAMDVR-LQRLYEHELVMYRLPESSATATPLSDLFDFSLCMCYGPL 194
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 368 RTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRN-KPSR 243
R+ T R+ T+ N R P P S R S +PR R+ PSR
Sbjct: 543 RSYTSPRQRRTSPNNRSPPPRRRSPSPRRPSPSPRRRSTSPSR 585
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +3
Query: 222 TPSRPNR-SRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAP 395
TPS P+ S P T + P+ + TPS APG G P P+ SAP
Sbjct: 466 TPSTPSTPSTPSTPSTPSTPSTPSTPSTSSTPSTPSTPSTPSAPGTPGTPSTPSTPSAP 524
>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
Length = 461
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = -2
Query: 386 AVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPH 216
A+ + T RP + R R P S R +T PSRP + R PH
Sbjct: 4 ALHNTLTRTRVPSRPCSLRTVRHPHTGTKSTMAYARDDTLTRTRVPSRPSRTVRHPH 60
>SB_39697| Best HMM Match : ER_lumen_recept (HMM E-Value=1.4)
Length = 151
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 733 SLLPDCRTPGHAEVHHVVVHNSLPTYNCVLGEINLELN 620
S+ PD +P H +H+VV S P Y CVL + L L+
Sbjct: 1 SVQPDAASPTHGH-NHIVVF-SRPVYFCVLSVVILILD 36
>SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 380 SRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSP 219
+RD R T R P ++ R P+P++ ++R P + + RP +R P
Sbjct: 151 NRDTRDTINNRHPRPSQQQRYPRPSQ-----QQRYPRPSQQQRHPRPSQQQRHP 199
>SB_24921| Best HMM Match : Pyr_redox (HMM E-Value=4.7e-15)
Length = 256
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Frame = +1
Query: 646 EHSYTLGGCCA-QQHD---VPPRAR 708
+H Y +G CCA QQ D VPPRA+
Sbjct: 222 DHIYVIGDCCACQQPDGSWVPPRAQ 246
>SB_9087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 327 VSRCAWAPGLCGGPDVPAHGS 389
++R W+ LCGGPD+ GS
Sbjct: 108 ITRSWWSSRLCGGPDINDDGS 128
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,996,896
Number of Sequences: 59808
Number of extensions: 524716
Number of successful extensions: 1571
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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