Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M16
         (885 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23530.1 68415.m02808 expressed protein ; expression supporte...    28   7.2  
At2g07280.1 68415.m00835 hypothetical protein                          28   9.5  

>At2g23530.1 68415.m02808 expressed protein ; expression supported
           by MPSS
          Length = 555

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 574 ARVTRGAESAASPPEPRSLFGRVRR 648
           ARVTR    AA  P P S+ GR+R+
Sbjct: 527 ARVTRSKRKAALEPNPDSIGGRLRQ 551


>At2g07280.1 68415.m00835 hypothetical protein
          Length = 401

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 839 INHSIXNFTNKAFFHCILVGVVXTHQC 759
           ++H+I N T   F HC  + ++ T QC
Sbjct: 354 VHHTIPN-TYTLFLHCFCISIINTPQC 379


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,139,469
Number of Sequences: 28952
Number of extensions: 215303
Number of successful extensions: 309
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)