Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_E13
         (474 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    25   1.8  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    23   7.2  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    22   9.5  

>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +2

Query: 335 TSLFHDTQEFLLIYFTIPISISFIYHFMQFFICEVFTKFLC 457
           +S+  D +E  +   +  I  + + H +  ++C +F+KF C
Sbjct: 13  SSITSDLEEHEIFPTSNAIIWTTVTHILCAYLCYIFSKFAC 53


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 121 VFLILKLHLMSFYCKQIKYIPI*RVNVITMYMKLL 17
           V LIL   L+SF C  + Y+P      +T+ + +L
Sbjct: 237 VNLILPTVLISFLCVLVFYLPAEAGEKVTLGISIL 271


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 50  SLNWNVFNLFAVETHEV 100
           S+NW V N + +  H V
Sbjct: 181 SMNWRVSNAYTLSDHRV 197


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 401,958
Number of Sequences: 2352
Number of extensions: 7040
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 41670678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)