Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H14
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80460.1 68414.m09423 glycerol kinase, putative similar to gl...   151   5e-37
At1g56120.1 68414.m06444 leucine-rich repeat family protein / pr...    28   5.9  
At5g51350.1 68418.m06367 leucine-rich repeat transmembrane prote...    28   7.7  
At4g30310.2 68417.m04308 ribitol kinase, putative similar to rib...    28   7.7  
At4g30310.1 68417.m04307 ribitol kinase, putative similar to rib...    28   7.7  

>At1g80460.1 68414.m09423 glycerol kinase, putative similar to
           glycerol kinase (ATP:glycerol 3-phosphotransferase,
           Glycerokinase, GK)[Mycobacterium tuberculosis]
           Swiss-Prot:O69664
          Length = 522

 Score =  151 bits (366), Expect = 5e-37
 Identities = 72/172 (41%), Positives = 107/172 (62%), Gaps = 1/172 (0%)
 Frame = +3

Query: 222 VAVIDDGTKTVRFVIYEAECSEELASYQMDKTEVQPHEGWSEQDPYEIMHHIKLCAENAI 401
           +  ID GT + RF+IY+ + +  +AS+Q++ T+  P  GW E DP EI+  +K+C   A+
Sbjct: 8   IGSIDQGTTSTRFIIYDHD-ARPVASHQVEFTQFYPEAGWVEHDPMEILESVKVCIAKAL 66

Query: 402 DQLTELGYSKDD-IITLGITNQRETTIAWDKYTGEPLHPAIAWNDIRTDSTVDAILAKVP 578
           D+ T  G++ D  +  +G+T+QRETT+ W K TG PLH AI W D RT S++   L K  
Sbjct: 67  DKATADGHNVDGGLKAIGLTDQRETTVVWSKSTGLPLHKAIVWMDART-SSICRRLEKEL 125

Query: 579 DRNKNYLKNICGLPISPYFSALKMRWLKDNVKAVXRAXXDKRLLFGTVDSWI 734
              +++    CGLPIS YFSA+K+ WL +NV  V  A      +FGT+D+W+
Sbjct: 126 SGGRSHFVESCGLPISTYFSAMKLLWLMENVDDVKDAIKKGDAIFGTIDTWL 177


>At1g56120.1 68414.m06444 leucine-rich repeat family protein / protein
            kinase family protein contains Pfam domains PF00560:
            Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1045

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 183  PEMPVRDGSKKPLV 224
            PEMP+RDG  KP+V
Sbjct: 1024 PEMPLRDGESKPMV 1037


>At5g51350.1 68418.m06367 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 895

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 375 CGALSRMDLALTNPRGAAP 319
           CG+L +MDL+  N RGA P
Sbjct: 536 CGSLKKMDLSHNNLRGAIP 554


>At4g30310.2 68417.m04308 ribitol kinase, putative similar to
           ribitol kinase [Klebsiella pneumoniae]
           gi|2905643|gb|AAC26495
          Length = 579

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 474 TIAWDKYTGEPLHPAIAWNDIRTDSTVDAILAKVPDRNKNYLKNICGLPISPYFSALKMR 653
           T++W   +G+     I W D R     +    ++   N   L+  CG  +SP     K+ 
Sbjct: 104 TVSW---SGDSRRNIIVWMDHRAVKQAE----RINSFNSPVLQ-YCGGGVSPEMEPPKLL 155

Query: 654 WLKDNVK 674
           W+K+N+K
Sbjct: 156 WVKENLK 162


>At4g30310.1 68417.m04307 ribitol kinase, putative similar to
           ribitol kinase [Klebsiella pneumoniae]
           gi|2905643|gb|AAC26495
          Length = 499

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 474 TIAWDKYTGEPLHPAIAWNDIRTDSTVDAILAKVPDRNKNYLKNICGLPISPYFSALKMR 653
           T++W   +G+     I W D R     +    ++   N   L+  CG  +SP     K+ 
Sbjct: 104 TVSW---SGDSRRNIIVWMDHRAVKQAE----RINSFNSPVLQ-YCGGGVSPEMEPPKLL 155

Query: 654 WLKDNVK 674
           W+K+N+K
Sbjct: 156 WVKENLK 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,971,731
Number of Sequences: 28952
Number of extensions: 323246
Number of successful extensions: 988
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)