Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H13
         (810 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70060.1 68414.m08061 paired amphipathic helix repeat-contain...    29   3.7  

>At1g70060.1 68414.m08061 paired amphipathic helix repeat-containing
           protein similar to transcription co-repressor Sin3
           [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 1362

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +3

Query: 225 SKRHLKEKVVQIYESFFRGEDLTTDNPTFWDEFFLLKPKIPQLEAEIH--KLSTEQLINM 398
           S +H+++   Q  ES F+ ED   +     +       ++ +L A+I+  +L T+  I +
Sbjct: 510 SFKHMRKN--QYEESLFKCEDDRFELDMLLESVISATNRVEELLAKINSNELKTDTPICI 567

Query: 399 KESMNILVEQCIEMLRQDH 455
           ++ +  L  +CIE L  DH
Sbjct: 568 EDHLTALNLRCIERLYSDH 586


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,434,932
Number of Sequences: 28952
Number of extensions: 295494
Number of successful extensions: 657
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)