Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H12
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46682| Best HMM Match : Fibrinogen_C (HMM E-Value=0.022)            29   4.0  
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   28   7.0  
SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)                   28   7.0  
SB_41955| Best HMM Match : RVT_1 (HMM E-Value=5.3e-15)                 28   7.0  
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)                 28   9.2  
SB_32172| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_46682| Best HMM Match : Fibrinogen_C (HMM E-Value=0.022)
          Length = 395

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = -1

Query: 458 VSKSSFCTLGCINNDSVTYCITIYL*FVSDRSTSLLINFLKLNRPSKSKPFSVEDTSICL 279
           V++ S C L C+ ND+   C ++ L   +D +       L  ++    K   + +TS+  
Sbjct: 30  VARQSACVLACLRNDT---CFSLNLAAKADANRQFWCEILATDKYKNQKLHEMNETSVHF 86

Query: 278 NFG 270
           + G
Sbjct: 87  SIG 89


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 569  WGSSDDDQINGQLKTVENPEYKSLYIHS 486
            W + D D  +G  KT+E  + KS+Y HS
Sbjct: 1576 WDNYDGDNDDGDSKTIEANKDKSVYHHS 1603


>SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)
          Length = 1206

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 460 DQTFDAVIVEWMYSDLYSGFSTVFNCPFIWSSSLEPHPMILR 585
           D+T D V+  W+ SD  S    ++   F+  S+L+P  M++R
Sbjct: 638 DETLDGVL--WIASDSSSADVPIWKSGFVSVSTLKPFKMVVR 677


>SB_41955| Best HMM Match : RVT_1 (HMM E-Value=5.3e-15)
          Length = 962

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 569 WGSSDDDQINGQLK--TVENPEYKSLYIHSTITASNV*SVS 453
           W S D +  NG+L   ++ENP YK++++      +N+ S S
Sbjct: 27  WRSRDGNASNGRLGVLSIENPGYKAVHVEQPSCLTNLESDS 67


>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
          Length = 323

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 406 VTESLLMHPNVQKLLLDTDQTFDAVIVEWMYSDL-YSGFSTVFNC 537
           ++ESLL+  NV   L+ T+ TF+ ++  W   +L Y+   TV  C
Sbjct: 271 LSESLLLAWNVTGCLVFTNSTFNPLVYYWKIRELRYNVNETVSLC 315


>SB_32172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 26/70 (37%), Positives = 33/70 (47%)
 Frame = +1

Query: 157 FPFPGKXHMILGEGYVRLLLEANHDVTYLTPAPLKIGHPKLRQIDVSSTEKGFDFDGLFN 336
           F FP K   I+G+ YV ++ E      Y    PL +G  K+R   VSST K  + D   N
Sbjct: 62  FCFPLK---IIGDCYVIVINENTKPGAYTGCPPLDLGGQKIR---VSSTRKCENDDRKRN 115

Query: 337 FKKLINKEVD 366
             K I   VD
Sbjct: 116 DLKTIMLRVD 125


>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1252

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 256 LKIGHPKLRQIDVSSTEKGFDFDGLFNFKKLINKEVDLSD 375
           +K G P LRQ  +       + D L+  KK+ NKE+ L++
Sbjct: 392 IKYGKPVLRQSHLKEICNLTNDDSLYLLKKVTNKEMSLTE 431


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,766,309
Number of Sequences: 59808
Number of extensions: 434967
Number of successful extensions: 1032
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)