Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H12
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13800.2 68418.m01610 hydrolase, alpha/beta fold family prote...    29   2.5  
At5g13800.1 68418.m01609 hydrolase, alpha/beta fold family prote...    29   2.5  
At3g20710.1 68416.m02621 F-box protein-related contains weak hit...    29   4.3  
At1g58410.1 68414.m06645 disease resistance protein (CC-NBS-LRR ...    29   4.3  
At3g26744.1 68416.m03344 basix helix-loop-helix (bHLH) family pr...    28   7.5  
At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containi...    27   9.9  

>At5g13800.2 68418.m01610 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Terrabacter sp. DBF63]
           GI:14196240; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 484

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 234 NVLNACSTKDWSSKIKTDRCIFNRKGF*F 320
           NV+  CS   WSSK+ T R + NR    F
Sbjct: 7   NVVPQCSVVTWSSKLATKRLVPNRSSLLF 35


>At5g13800.1 68418.m01609 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Terrabacter sp. DBF63]
           GI:14196240; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 484

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 234 NVLNACSTKDWSSKIKTDRCIFNRKGF*F 320
           NV+  CS   WSSK+ T R + NR    F
Sbjct: 7   NVVPQCSVVTWSSKLATKRLVPNRSSLLF 35


>At3g20710.1 68416.m02621 F-box protein-related contains weak hit to
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           contains weak hit to Pfam PF00646: F-box domain
          Length = 362

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 443 NCFWIQIKRLMP*LLSGCIATCILGFQLSSTVH 541
           N +W Q KR+MP    GC     LG+  SS  H
Sbjct: 125 NPYWGQTKRIMPRPPFGCFDRYALGYDKSSGSH 157


>At1g58410.1 68414.m06645 disease resistance protein (CC-NBS-LRR
            class), putative domain signature CC-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 899

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
 Frame = +1

Query: 229  DVTYLTPAPLKIGHPKLRQID-VSSTEKGFDFDGLF---NFKKLINKEVDLSDTNHKYIV 396
            D TYL    L I  P+L +I  + S     D        +   ++ K ++L D +  Y+ 
Sbjct: 744  DFTYLKKLTLSIEMPRLPKIQHLPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSLDYLS 803

Query: 397  M--QYVTESLLMHPNVQKLLLDTDQTFDAVIVEWMYSDLYSGFSTVFNCPFIWSSSLEPH 570
               + +  S    P ++KL LD  + ++  IVE        G  +  +   IWSS+L+  
Sbjct: 804  FSGRKMVCSAGGFPQLRKLALDEQEEWEEWIVE-------EGSMSRLHTLSIWSSTLKEL 856

Query: 571  PMILRLIDSLPN 606
            P  LR I SL N
Sbjct: 857  PDGLRFIYSLKN 868


>At3g26744.1 68416.m03344 basix helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 494

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 547 WSSSLEPHPMILRLIDSLPNPAYF 618
           W SS +PHP  L+++ + P+  YF
Sbjct: 47  WFSSNQPHPQDLQMLQNQPDFRYF 70


>At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1038

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -3

Query: 552 RPNKWTVEDS*----KPRIQVAIHPLNNHGIKRLICIQKQFL 439
           RP+ W++ D      KPR +   HPL++   +R+I  + Q+L
Sbjct: 40  RPDPWSLSDGNPEKPKPRYERPKHPLSDDDARRIIKKKAQYL 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,398,428
Number of Sequences: 28952
Number of extensions: 298028
Number of successful extensions: 755
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)