Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H10
(535 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 7e-42
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 30 1.0
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35) 28 4.2
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 28 5.5
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_4823| Best HMM Match : HTH_1 (HMM E-Value=4.5e-18) 27 7.3
SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15) 27 9.6
>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 167 bits (405), Expect = 7e-42
Identities = 79/95 (83%), Positives = 88/95 (92%), Gaps = 2/95 (2%)
Frame = +3
Query: 192 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRI 365
+ VR+ KV CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR++MRI
Sbjct: 6 KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65
Query: 366 HKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 470
HKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 66 HKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100
>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 31.5 bits (68), Expect = 0.45
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Frame = +2
Query: 101 HGSRCSVRQXHRATPGXGLPYSPHQDHSYFSQCALTR---EGLC*PNQWSQETEAACKGP 271
H R + A P G Y P +SY + CA T+ +G + A+ +
Sbjct: 249 HEHRVTPPSFPTAPPRAG--YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPA 306
Query: 272 SPHANQDPAYHHP 310
PH N DPA+ P
Sbjct: 307 MPHYNSDPAHTEP 319
>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
Length = 584
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 191 SQCALTREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 310
S C GLC P + ++ + GPSP + DP+ P
Sbjct: 412 SICLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451
>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
Length = 1049
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = -3
Query: 491 FYWRLCLRVGDGHLNLYTGLDVN*GDLFHNFRGRV*VDHSLVDSHLK 351
FY L L V D L G+D DLF R VD+SLV +K
Sbjct: 405 FYSNLVLEVSDNETELVNGIDQLWDDLFVESRR---VDYSLVSVKMK 448
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 266 GPSPHANQDPAYHHP 310
GP PH+ Q P HHP
Sbjct: 1189 GPPPHSMQQPLLHHP 1203
>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 93 TSNMAAAVVSGKXIEQPQAXVSPIHRIRITLTSRNVRSLEK 215
T N A+ ++S + +PQA + P+H I + SRN ++ K
Sbjct: 306 TLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343
>SB_4823| Best HMM Match : HTH_1 (HMM E-Value=4.5e-18)
Length = 419
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 142 GCSMXLPDTTAAAMLLVEXRPRETTXQAKIVQR*TGETARFKEL 11
GC++ LP A++ L+ RP E + + R T TA K L
Sbjct: 178 GCTLPLPPAALASLPLLHLRP-ENRSRCGAISRSTTMTATLKNL 220
>SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 27.1 bits (57), Expect = 9.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 498 KNILLAALPTRRRWSPQP 445
+N+++ LPT +RW P P
Sbjct: 180 RNVVIQRLPTSQRWQPYP 197
>SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 276 RMPTKILRITT-RKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 404
R+PT + T +K PC TW R + KR + +H P+ +
Sbjct: 22 RVPTAFPSVATGKKYPCQRKKVTWSR-KKNPFKRRVPVHVPTSL 64
>SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15)
Length = 365
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 133 SSNPRQXSPLFTASGSLLLLAMCA 204
SS PR+ SPLFT SG + A C+
Sbjct: 206 SSQPRESSPLFTFSGH-AVFASCS 228
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,128,765
Number of Sequences: 59808
Number of extensions: 318579
Number of successful extensions: 647
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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