Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H10
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ...   176   7e-45
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ...   176   7e-45
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo...   175   2e-44
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ...   175   2e-44
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,...    56   1e-08
At1g20530.1 68414.m02558 hypothetical protein                          30   1.1  
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ...    27   5.9  
At3g18310.1 68416.m02330 expressed protein                             27   7.9  

>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  176 bits (429), Expect = 7e-45
 Identities = 78/109 (71%), Positives = 97/109 (88%)
 Frame = +3

Query: 144 QAXVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 323
           +A +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 324 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 470
           GEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 74  GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  176 bits (429), Expect = 7e-45
 Identities = 78/109 (71%), Positives = 97/109 (88%)
 Frame = +3

Query: 144 QAXVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 323
           +A +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 324 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 470
           GEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 74  GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
           ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
          Length = 124

 Score =  175 bits (425), Expect = 2e-44
 Identities = 79/113 (69%), Positives = 99/113 (87%)
 Frame = +3

Query: 132 IEQPQAXVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTR 311
           +E+P   +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTR
Sbjct: 15  LEEP---LEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTR 71

Query: 312 KTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 470
           K PCGEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 72  KAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
           ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
          Length = 124

 Score =  175 bits (425), Expect = 2e-44
 Identities = 79/113 (69%), Positives = 99/113 (87%)
 Frame = +3

Query: 132 IEQPQAXVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTR 311
           +E+P   +  IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMPTK+L+ITTR
Sbjct: 15  LEEP---LEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTR 71

Query: 312 KTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 470
           K PCGEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 72  KAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
           putative similar to 30S ribosomal protein S10 GB:P02364
           [Escherichia coli] (est matches suggest the N-terminal
           extension)
          Length = 191

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
 Frame = +3

Query: 105 AAAVVSGKXIEQPQAXVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 284
           A+ V S   I      ++P  +IRI L S  V  +E  C  +++ A+    +  GPV +P
Sbjct: 73  ASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLP 132

Query: 285 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVID-LHSPSEIVKQITSINIEPGVEVEVTI 461
           TK       K+P       +  F++R H+R+ID L+  ++ +  +  +++  GV+VEV +
Sbjct: 133 TKKRIYCVLKSPHVHKDARF-HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191


>At1g20530.1 68414.m02558 hypothetical protein
          Length = 614

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 384 GRSLSCGFASENDPRSLNLHHKEFYGW*YAGSWLACGLGPLHAASVSW 241
           G   +C   S + P SLNL+H  FY   Y    +     P   ++ +W
Sbjct: 106 GEGTNCDLLSGSKPESLNLNHDSFYSRRYESGTITPPPPPPAPSNYAW 153


>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 439

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 5   FQKFLETCGFSGSALXNFCLXSCFSRPXFNKQHGSRCSVRQXHRATP 145
           ++  L+TCG  G +    C    FSR     +H   CS R+ HR  P
Sbjct: 160 YKAHLKTCGTRGHSCD--C-GRVFSRVESFIEHQDNCSARRVHREPP 203


>At3g18310.1 68416.m02330 expressed protein
          Length = 873

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 236 WSQETEAACKGPSPHANQDPA 298
           W+ +++  C GPSP   +DP+
Sbjct: 400 WNAQSQMFCFGPSPSVGKDPS 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,388,923
Number of Sequences: 28952
Number of extensions: 210534
Number of successful extensions: 450
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)