Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H04
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15850.1 68416.m02005 fatty acid desaturase family protein si...    31   1.1  
At2g29510.1 68415.m03584 expressed protein                             31   1.1  
At1g09470.1 68414.m01059 expressed protein ; expression supporte...    30   1.5  
At5g24340.1 68418.m02868 3'-5' exonuclease domain-containing pro...    28   6.1  
At1g10420.1 68414.m01174 hypothetical protein                          28   8.1  

>At3g15850.1 68416.m02005 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 371

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/74 (27%), Positives = 38/74 (51%)
 Frame = +2

Query: 347 PSRSLNKIKETRHTTVERIKPPPDLLSGHMKRIKLENVTTKCSHMNSNNHKRKIINDPNS 526
           PS +  +I  T H  +   KPP  +++   K +K  +VTT  +     +++R +++D   
Sbjct: 28  PSLNFTRISFTHHQKLAPFKPPSLVVAFSEKGLK-RDVTTAAA-ATEGDYRRIMLSD--- 82

Query: 527 EPIQAKKERKVITW 568
             +  KK+ KV+ W
Sbjct: 83  --VLVKKKEKVVWW 94


>At2g29510.1 68415.m03584 expressed protein
          Length = 839

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +2

Query: 287 KYRDSGRGKILN-RTRHISPEPSRSLNKIKETRHTTVERIKPPPDLLSGHM-KRIKLENV 460
           K  D    K+L+ R R ISP    S +  K ++++  E  K PP L +  +  R  L+N 
Sbjct: 391 KQSDQKPAKVLSERARSISPFRRLSFSIGKSSKNSNTEDAKTPPHLSTALISSRAGLDNP 450

Query: 461 TTKCSHMNSNNHKRKIINDPNSEPIQ 538
           +      +S+  K    N   S P++
Sbjct: 451 SASSFSDSSSFDKTSAANRGRSSPLR 476


>At1g09470.1 68414.m01059 expressed protein ; expression supported
           by MPSS
          Length = 336

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/90 (21%), Positives = 44/90 (48%)
 Frame = +2

Query: 170 EQLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYCVPYGQRKYRDSGRGKILNRTRHISPEP 349
           EQL ++ ++  +R +  +K LRD+LL +           K +++   ++ N     +P+ 
Sbjct: 152 EQLENLRKELRVR-ESSQKQLRDELLKVEGDIMRAVSVVKTKENS--EVRNMLNEDTPKN 208

Query: 350 SRSLNKIKETRHTTVERIKPPPDLLSGHMK 439
           S  +NK+   +   + R++    ++S H +
Sbjct: 209 SERINKLLTAKDDEIARLRDELKIISAHWR 238


>At5g24340.1 68418.m02868 3'-5' exonuclease domain-containing
           protein contains Pfam profile PF01612: 3'-5' exonuclease
          Length = 505

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 134 HEMLLHPELLSNEQLTHIIEQRHLRIDGIEKMLR 235
           H++     LL NEQL  +IE   L+I G + M R
Sbjct: 402 HQIYRVKSLLKNEQLLEVIETFQLKISGNQLMSR 435


>At1g10420.1 68414.m01174 hypothetical protein
          Length = 133

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 299 SGRGKILNRTRHISPEPSRSLNKIKETRHTTVERIKP-PPDLLSGHMKRIKLENVTTK 469
           +G+G I +R+ H S E   S+NK K+T    + +++    DL S    +  LE    K
Sbjct: 61  AGKGAISHRS-HYSCESGSSINKQKQTEEDCIRKVQELQADLASSRETQEALERKVWK 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,376,798
Number of Sequences: 28952
Number of extensions: 281044
Number of successful extensions: 739
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)