Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_G23
(814 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41760.1 68418.m05084 nucleotide-sugar transporter family pro... 87 2e-17
At3g59360.2 68416.m06620 nucleotide-sugar transporter family pro... 70 2e-12
At3g59360.1 68416.m06619 nucleotide-sugar transporter family pro... 70 2e-12
At4g35335.1 68417.m05021 nucleotide-sugar transporter family pro... 59 3e-09
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 32 0.52
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 31 0.91
At1g76670.1 68414.m08921 transporter-related low similarity to g... 28 6.4
>At5g41760.1 68418.m05084 nucleotide-sugar transporter family
protein low similarity to SP|Q61420 CMP-sialic acid
transporter {Mus musculus}; contains Pfam profile
PF04142: Nucleotide-sugar transporter
Length = 340
Score = 86.6 bits (205), Expect = 2e-17
Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 5/244 (2%)
Frame = +1
Query: 97 QGVFVTASKTENGGYDYNTTLVVFLSELLKLIVSAILYTLGRENKPHIFKAIAINXXXXX 276
QG+ T S+++ GGY Y+ V FL+E+ KLI+S + I +
Sbjct: 20 QGILTTLSQSD-GGYKYDYATVPFLAEVFKLIISGLFLWREMRTSSSTTSRITTDWKSVR 78
Query: 277 XXXXXXXXXCFYNNLAFINLSHYDPTSYYILLQFRVVLTALLFQFLFKKDLTFIQWISLG 456
+NN+ F L++ D ++Y I+ ++V T +LF+ K+ L+ +QW+++G
Sbjct: 79 LFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFLKRKLSKLQWMAIG 138
Query: 457 ILTIGCMIKNFDASTVNSKEDGNAWSQVLNIYFLSINFQNFCSCLAGTFNEYLLKKQGSH 636
+L +G S + + ++ + Y L I S LAG + E+L+K+
Sbjct: 139 LLAVGTTTSQVKGCGEASCD--SLFTAPIQGYLLGI-LSAGLSALAGIYTEFLMKRNND- 194
Query: 637 VNIFLQNVFMYLDSVLCNXIVLLLKG-----ELGAIFEDFNSLYDIFVILIIVNSAIXGI 801
++ QN+ +Y L N L+ E G ++ Y I L+++N G+
Sbjct: 195 -TLYWQNLQLYTFGSLFNVARLIADDFRHGFEKGPWWQRIFDGYSITTWLVVLNLGSTGL 253
Query: 802 VTSF 813
+ S+
Sbjct: 254 LVSW 257
>At3g59360.2 68416.m06620 nucleotide-sugar transporter family
protein low similarity to SP|P78382 CMP-sialic acid
transporter {Homo sapiens}; contains Pfam profile
PF04142: Nucleotide-sugar transporter
Length = 405
Score = 69.7 bits (163), Expect = 2e-12
Identities = 72/284 (25%), Positives = 130/284 (45%), Gaps = 15/284 (5%)
Frame = +1
Query: 7 LQRK*NDAKI-YSLISRVLSFLLCI*FYLV--FQGVFVTASKTENGGYDYNTTLVVFLSE 177
+ R +D KI S RVL+ LL + ++ Q V V SK + G ++++ V FL+E
Sbjct: 23 ISRAYDDHKIRVSSKQRVLNVLLVVGDCMLVGLQPVLVYMSKVD-GKFNFSPISVNFLTE 81
Query: 178 LLKLIVSAILYTLGREN-----KPHIFKAIAINXXXXXXXXXXXXXXCFYNN-LAFINLS 339
+ K+I + ++ + + KP + + + NN L F
Sbjct: 82 IAKVIFAIVMLLIQARHQKVGEKPLLSVSTFVQAARNNVLLAVPALLYAINNYLKFTMQL 141
Query: 340 HYDPTSYYILLQFRVVLTALLFQFLFKKDLTFIQWISLGILTIGCMIKNFDASTVNSKED 519
+++P + +L +V++ A+L + + K+ + IQW +L +L IG + + +
Sbjct: 142 YFNPATVKMLSNLKVLVIAVLLKMVMKRRFSIIQWEALALLLIGISVNQLRSLPEGATAI 201
Query: 520 GNAWSQVLNIYFLSINFQNFCSCLAGTFNEYLLKKQGSHVNIFLQNVFMYLDSVLCNXIV 699
G + Y ++ F S +A FNEY LK Q +I+LQN+F+Y + N +
Sbjct: 202 GIPLAT--GAYVCTVIFVTVPS-MASVFNEYALKSQYD-TSIYLQNLFLYGYGAIFNFL- 256
Query: 700 LLLKGELGAIFEDFNSLYDIF------VILIIVNSAIXGIVTSF 813
G LG + +DI + +I+N+A GI++SF
Sbjct: 257 ----GILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSF 296
>At3g59360.1 68416.m06619 nucleotide-sugar transporter family
protein low similarity to SP|P78382 CMP-sialic acid
transporter {Homo sapiens}; contains Pfam profile
PF04142: Nucleotide-sugar transporter
Length = 405
Score = 69.7 bits (163), Expect = 2e-12
Identities = 72/284 (25%), Positives = 130/284 (45%), Gaps = 15/284 (5%)
Frame = +1
Query: 7 LQRK*NDAKI-YSLISRVLSFLLCI*FYLV--FQGVFVTASKTENGGYDYNTTLVVFLSE 177
+ R +D KI S RVL+ LL + ++ Q V V SK + G ++++ V FL+E
Sbjct: 23 ISRAYDDHKIRVSSKQRVLNVLLVVGDCMLVGLQPVLVYMSKVD-GKFNFSPISVNFLTE 81
Query: 178 LLKLIVSAILYTLGREN-----KPHIFKAIAINXXXXXXXXXXXXXXCFYNN-LAFINLS 339
+ K+I + ++ + + KP + + + NN L F
Sbjct: 82 IAKVIFAIVMLLIQARHQKVGEKPLLSVSTFVQAARNNVLLAVPALLYAINNYLKFTMQL 141
Query: 340 HYDPTSYYILLQFRVVLTALLFQFLFKKDLTFIQWISLGILTIGCMIKNFDASTVNSKED 519
+++P + +L +V++ A+L + + K+ + IQW +L +L IG + + +
Sbjct: 142 YFNPATVKMLSNLKVLVIAVLLKMVMKRRFSIIQWEALALLLIGISVNQLRSLPEGATAI 201
Query: 520 GNAWSQVLNIYFLSINFQNFCSCLAGTFNEYLLKKQGSHVNIFLQNVFMYLDSVLCNXIV 699
G + Y ++ F S +A FNEY LK Q +I+LQN+F+Y + N +
Sbjct: 202 GIPLAT--GAYVCTVIFVTVPS-MASVFNEYALKSQYD-TSIYLQNLFLYGYGAIFNFL- 256
Query: 700 LLLKGELGAIFEDFNSLYDIF------VILIIVNSAIXGIVTSF 813
G LG + +DI + +I+N+A GI++SF
Sbjct: 257 ----GILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSF 296
>At4g35335.1 68417.m05021 nucleotide-sugar transporter family
protein similar to SP|O77592 UDP N-acetylglucosamine
transporter (Golgi UDP-GlcNAc transporter) {Canis
familiaris}, SP|P78382 CMP-sialic acid transporter {Homo
sapiens}; contains Pfam profile PF04142:
Nucleotide-sugar transporter
Length = 302
Score = 59.3 bits (137), Expect = 3e-09
Identities = 41/162 (25%), Positives = 77/162 (47%)
Frame = +1
Query: 307 FYNNLAFINLSHYDPTSYYILLQFRVVLTALLFQFLFKKDLTFIQWISLGILTIGCMIKN 486
F N L + ++ D Y IL ++ T +L++ + K+ L+ IQW +L GC
Sbjct: 124 FKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSEIQWAGFILLCCGC---- 179
Query: 487 FDASTVNSKEDGNAWSQVLNIYFLSINFQNFCSCLAGTFNEYLLKKQGSHVNIFLQNVFM 666
+ +NS D L + ++I S AG + E ++KK+ S NI +QN ++
Sbjct: 180 -TTAQLNSNSD-RVLQTSLPGWTMAI-VMALLSGFAGVYTEAIIKKRPSR-NINVQNFWL 235
Query: 667 YLDSVLCNXIVLLLKGELGAIFEDFNSLYDIFVILIIVNSAI 792
Y+ + N + ++++ + F Y +L+I+N A+
Sbjct: 236 YVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITLLMILNHAL 277
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 31.9 bits (69), Expect = 0.52
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 631 SHVNIFLQNVFMYLDSVLCNXIVLLLKGELGAIFEDFNSLYDIFVILIIVN 783
S + ++ + L S+LC IV + G ++++ F SLY IF L+I N
Sbjct: 1214 SFSQVLVEVPYSLLQSLLCTIIVYPMIGYHMSVYKMFWSLYSIFCSLLIFN 1264
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 31.1 bits (67), Expect = 0.91
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 631 SHVNIFLQNVFMYLDSVLCNXIVLLLKGELGAIFEDFNSLYDIFVILIIVN 783
S + ++ + L S+LC IV G ++++ F SLY IF L+I N
Sbjct: 1150 SFSQVLIEVPYSLLQSLLCTIIVYPTIGYHMSVYKMFWSLYSIFCSLLIFN 1200
>At1g76670.1 68414.m08921 transporter-related low similarity to
glucose-6-phosphate/phosphate-translocator precursor
[Solanum tuberosum] GI:2997593, GDP-Mannose transporter
[Arabidopsis thaliana] GI:15487237; contains Pfam
profile PF00892: Integral membrane protein
Length = 347
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +1
Query: 307 FYNNLAFINLSHYDPTSYYILLQFRVVLTALLFQFLFKKDLTFIQWISLGILTIGCMI 480
F N ++ + + TS+ +L + V L LF ++TF + I +G +I
Sbjct: 240 FCNISQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSEMTFKNIAGMAIAIVGMVI 297
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,416,066
Number of Sequences: 28952
Number of extensions: 293398
Number of successful extensions: 687
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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