Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_G14
(470 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal prote... 105 2e-23
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical... 29 1.7
Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical pr... 27 6.8
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen... 27 6.8
U50135-5|AAN63430.2| 346|Caenorhabditis elegans Hypothetical pr... 27 6.8
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st... 27 6.8
AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein. 27 6.8
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 27 9.0
AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical ... 27 9.0
>U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 36 protein.
Length = 104
Score = 105 bits (252), Expect = 2e-23
Identities = 54/103 (52%), Positives = 71/103 (68%)
Frame = +1
Query: 73 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 252
+AVGL KGH T++ ++ R R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9 LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58
Query: 253 AMELLKVSKDXRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 381
+E+L++SKD RALKFLKRR+GTH RAK KREEL NV+ RK
Sbjct: 59 VLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101
>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
protein Y47D3A.26 protein.
Length = 1205
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 154 IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDXR 288
++ ++ L T + L+REV G Y++R E LK+ K+ +
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184
>Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical
protein T08G5.5b protein.
Length = 926
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 157 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDXRAL 294
R LK L+ HS + ++ ++ HA YE+RA+ L ++ + +AL
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 724
>Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical
protein T08G5.5a protein.
Length = 923
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 157 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDXRAL 294
R LK L+ HS + ++ ++ HA YE+RA+ L ++ + +AL
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 721
>Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical
protein C25G4.7 protein.
Length = 349
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +1
Query: 202 VRDLVREVVGHAQYEKRAMELLKV----SKDXRALKFLKRRLG 318
+RD + EV+G+ Q++K +E+L V + +LK+ R +G
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTVIVFDINNFLSLKYFNRFVG 175
>Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical
protein F32H2.3 protein.
Length = 824
Score = 27.1 bits (57), Expect = 6.8
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 42 SVRNHGSSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*FS 215
S RNHG F N S P NN N+ G R S + + ++ SS T+ FS
Sbjct: 413 SSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTFS 471
>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
protein.
Length = 1603
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 43 QSEIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRD 210
++E++A R ++ LR+ H+ +++ K + K I T+ KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185
Query: 211 LVREVVGHAQYE 246
+ RE G +YE
Sbjct: 1186 IEREYKGIPEYE 1197
>U50135-5|AAN63430.2| 346|Caenorhabditis elegans Hypothetical
protein C52E12.6 protein.
Length = 346
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 277 KDXRALKF-LKRRLGTHIRAKRKREELSNVLAQM 375
K+ R +KF R L H+R + K +ELS + M
Sbjct: 207 KECRGIKFRFNRELNEHVRLQHKSKELSCCVCNM 240
>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 5 protein.
Length = 1603
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 43 QSEIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRD 210
++E++A R ++ LR+ H+ +++ K + K I T+ KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185
Query: 211 LVREVVGHAQYE 246
+ RE G +YE
Sbjct: 1186 IEREYKGIPEYE 1197
>AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein.
Length = 824
Score = 27.1 bits (57), Expect = 6.8
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 42 SVRNHGSSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*FS 215
S RNHG F N S P NN N+ G R S + + ++ SS T+ FS
Sbjct: 413 SSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTFS 471
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 26.6 bits (56), Expect = 9.0
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 163 ARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDXRALKFL--KRRLGTHIRAK 336
AR+K + K K + + R+ + +A E LK+ ++ + K L +R+ + K
Sbjct: 535 ARIKEEEEKQRKILEEEARKKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKEELEIK 594
Query: 337 RKREE 351
RK EE
Sbjct: 595 RKAEE 599
>AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical
protein H23N18.4 protein.
Length = 475
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 211 LVREVVGHAQYEKRAMELLKV 273
+V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,829,538
Number of Sequences: 27780
Number of extensions: 159348
Number of successful extensions: 386
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -