Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G05
         (725 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.83 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   4.4  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    22   4.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   4.4  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 321 LKEVVQALESDPDFRE 368
           + +V++ +E+DPDF E
Sbjct: 22  ISDVIEVIETDPDFHE 37


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +3

Query: 387 EEDVKSGKIAEQLDFVNHNVRTRLD 461
           EE  K+G++  ++D  +H++R  ++
Sbjct: 585 EEANKAGELIHKIDTEDHDIRDEIE 609


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +3

Query: 387 EEDVKSGKIAEQLDFVNHNVRTRLD 461
           EE  K+G++  ++D  +H++R  ++
Sbjct: 310 EEANKAGELIHKIDTEDHDIRDEIE 334


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 330 VVQALESDPDFRERLEKAD 386
           ++ A++ DP    +LEKAD
Sbjct: 61  ILDAMKKDPARHSKLEKAD 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,010
Number of Sequences: 336
Number of extensions: 2842
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)