Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_J22
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21607| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)     28   5.3  
SB_12261| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)                   28   5.3  
SB_4714| Best HMM Match : Cuticle_2 (HMM E-Value=5.9)                  28   5.3  
SB_43381| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_30442| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_44519| Best HMM Match : Ribonuc_red_lgC (HMM E-Value=0)             27   9.2  
SB_11601| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_21607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -2

Query: 397 NSAIIAAMSQPGRTKKDCGLVYQQLSEDLTGPATPKLSRYAPLHSVTVNASNMSYESS 224
           N+ I+       R  K+CG+V++ +S D TG         + ++  T+  S   +++S
Sbjct: 92  NTNILQTQDTQAREHKNCGMVHRGMSTD-TGQQPQGSQNLSRMNHATIEGSPQGFQNS 148


>SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)
          Length = 832

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 395 QCHYCSDESTRPHQKGLRLGIP 330
           QC + +D S+ PH KGL+L  P
Sbjct: 271 QCKHHTDVSSMPHLKGLKLAHP 292


>SB_12261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 164 IKFCT-CGSHCFWHDVVVVEGTALIGHVGCIDSD 262
           IK CT CG+H  WH  ++ +G     H  C   D
Sbjct: 226 IKKCTACGTHGLWHSQLLFQGYTK-SHPQCFSMD 258


>SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)
          Length = 544

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 164 IKFCT-CGSHCFWHDVVVVEGTALIGHVGCIDSD 262
           IK CT CG+H  WH  ++ +G     H  C   D
Sbjct: 72  IKKCTACGTHGLWHSQLLFQGYTK-SHPQCFSMD 104


>SB_4714| Best HMM Match : Cuticle_2 (HMM E-Value=5.9)
          Length = 165

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 164 IKFCT-CGSHCFWHDVVVVEGTALIGHVGCIDSD 262
           IK CT CG+H  WH  ++ +G     H  C   D
Sbjct: 70  IKKCTACGTHGLWHSQLLFQGYTK-SHPQCFSMD 102


>SB_43381| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 52  CLYVDTRGTXRPKETSA 2
           CLY+DT GT RP+   A
Sbjct: 156 CLYIDTEGTFRPERLLA 172


>SB_30442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -1

Query: 308 RSGHSKTKPICSTSQRHCQCIQHVL*EQSLPPQQHRARSS 189
           RSG  KT  + STS +          E+SLPP   R RSS
Sbjct: 11  RSGKGKTALLSSTSGKAAASTLKPHYEKSLPPPNIRPRSS 50


>SB_44519| Best HMM Match : Ribonuc_red_lgC (HMM E-Value=0)
          Length = 783

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 391 AIIAAMSQPGRTKKDCGLVYQQLSEDLTGPATPKLSRYAPLHS 263
           AI+AA  +     K+   V+ ++ E+L     PK ++++PL S
Sbjct: 69  AILAARIEVSNLHKETKKVFSEVMEELYNYVNPKNNKHSPLIS 111


>SB_11601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 333 TSSCPKTSQVRPLQN*ADMLHFTASLSMHPTCPMRAVPSTTTTSCQKQCEPHVQNLI 163
           TS+ P+  ++R      D+LH  A LS+  +    A  S T  +CQ  C+  V + I
Sbjct: 24  TSAKPRDLRMREFAR--DLLHDHAHLSITLSRDSHAHLSITLKTCQSLCQEPVNHFI 78


>SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 379 AMSQPGRTKKDCGLVYQQLSE 317
           A S PGRTKK+C   Y++L E
Sbjct: 571 AESVPGRTKKECMKRYKELVE 591


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,830,326
Number of Sequences: 59808
Number of extensions: 317177
Number of successful extensions: 1227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)