Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_I13
(413 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 157 3e-39
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 155 1e-38
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 151 2e-37
At4g35720.1 68417.m05069 expressed protein contains Pfam profile... 31 0.41
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 30 0.54
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si... 29 1.2
At4g26980.1 68417.m03882 expressed protein 27 3.8
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit... 27 3.8
At5g50640.1 68418.m06274 CBS domain-containing protein / octicos... 27 6.6
At5g50530.1 68418.m06258 CBS domain-containing protein / octicos... 27 6.6
At1g80180.1 68414.m09384 expressed protein 26 8.7
At1g65860.1 68414.m07473 flavin-containing monooxygenase family ... 26 8.7
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 157 bits (381), Expect = 3e-39
Identities = 74/117 (63%), Positives = 88/117 (75%), Gaps = 5/117 (4%)
Frame = -2
Query: 382 MADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 218
MA+QTEKAF KQ VFL+ K K K R KN+GLGFKTPREAIEGTYID+KCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60
Query: 217 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLAPCLQ 47
FTG VSIRGRIL+G KMQRTI++RRDYLH++ KY R+EKRH N+ H++PC +
Sbjct: 61 FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR 117
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 155 bits (375), Expect = 1e-38
Identities = 72/117 (61%), Positives = 86/117 (73%), Gaps = 5/117 (4%)
Frame = -2
Query: 382 MADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 218
MA+QTEKAF KQ VFL+ K K K R KN+GLGFKTPREAI+G Y+DKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60
Query: 217 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLAPCLQ 47
FTG VSIRGRIL G KMQRTI++RRDYLH++ KY R+EKRH N+ H++PC +
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR 117
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 151 bits (365), Expect = 2e-37
Identities = 72/117 (61%), Positives = 86/117 (73%), Gaps = 5/117 (4%)
Frame = -2
Query: 382 MADQTEKAFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCP 218
MA+QTEKAF KQ VFL+ K G KR R KN+GLGFKTPREAI+G YID KCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60
Query: 217 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLAPCLQ 47
FTG VSIRGRIL G KMQRTI++RR+YLH++ KY R+EKRH N+ H++PC +
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR 117
>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function
Length = 325
Score = 30.7 bits (66), Expect = 0.41
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 337 FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 209
FL+ G+K K+ HHK G+ K ++ IE + +K+ TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 30.3 bits (65), Expect = 0.54
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 178 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVH 65
G V KMQ+++V+ D L + YNR+ KR H
Sbjct: 6 GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAH 43
>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GB:Y08858 from
[Nicotiana plumbaginifolia]
Length = 105
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 190 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVH 65
+ + G V KMQ ++V+ D L + YNR+ KR H
Sbjct: 2 KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAH 43
>At4g26980.1 68417.m03882 expressed protein
Length = 343
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -2
Query: 268 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 164
+ PREA+ +D+ PF ++ + ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274
>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 206
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 193 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 77
G+++ GVV+ +R + + R + L NRF RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206
>At5g50640.1 68418.m06274 CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein contains Pfam profiles: PF00571 CBS domain,
PF00564: PB1 domain
Length = 548
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 380 GGSDRESVSETGHRFPEQERWHEEEG 303
GG R+S+S +GH F +++ E EG
Sbjct: 5 GGPSRKSLSFSGHSFQGRKKASENEG 30
>At5g50530.1 68418.m06258 CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein contains Pfam profiles: PF00571 CBS domain,
PF00564: PB1 domain
Length = 548
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 380 GGSDRESVSETGHRFPEQERWHEEEG 303
GG R+S+S +GH F +++ E EG
Sbjct: 5 GGPSRKSLSFSGHSFQGRKKASENEG 30
>At1g80180.1 68414.m09384 expressed protein
Length = 138
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = -2
Query: 394 LSSKMADQTEKAFQKQATVFLNRKGGMKRK------DMRHHKNVG 278
++S++ DQT K + + GGM+R +RHH+N G
Sbjct: 51 ITSEVQDQTTKPIAGEGLKPIRTDGGMERSRSNGGGAIRHHRNTG 95
>At1g65860.1 68414.m07473 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenase FMO3 (dimethylaniline
monoxygenase (N-oxide forming) 3) GI:349533 [SP|P32417]
from Oryctolagus cuniculus, [SP|P97501] from Mus
musculus; contains Pfam profile PF00743 Flavin-binding
monooxygenase-like domain
Length = 459
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 332 EQERWHEEEGHASP*ECWFRLQNSQRG 252
E W EE H SP E W R+Q +RG
Sbjct: 390 EYLNWIAEECHCSPVENW-RIQEVERG 415
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,390,596
Number of Sequences: 28952
Number of extensions: 189561
Number of successful extensions: 450
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -