Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_I08
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta...   180   6e-46

>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
           Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
           ontains Pfam profile PF00032: Cytochrome
           b(C-terminal)/b6/petD; 99% identical to  apocytochrome B
           (GI:6851014), cytochrome b (GI:402962), and Cytochrome b
           (Swiss-Prot:P42792) [Arabidopsis thaliana]
          Length = 393

 Score =  180 bits (439), Expect = 6e-46
 Identities = 100/240 (41%), Positives = 135/240 (56%), Gaps = 2/240 (0%)
 Frame = -1

Query: 718 IYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGASFFFICIYLHIGRGIYYESFNL--K 545
           ++YT ++++AF  V +I R+V  G ++R +HANGAS F I +YLHI RG+Y+ S++   +
Sbjct: 58  MHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFLIVVYLHIFRGLYHASYSSPRE 117

Query: 544 YV*LXXXXXXXXXXXXXXXGYVLP*GQISFWGATVITNLLSAIPYLGTILVN*I*GGFAV 365
           +V                 GYVLP GQ+SFWGATVIT+L SAIP +G  +V  + GGF+V
Sbjct: 118 FVWCLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSV 177

Query: 364 DNATLTRFYTXXXXXXXXXXXXXXXXXXXXHQTGSNNPLGLNRNLDKIPFHPFFTFKDXX 185
           DNATL RF++                    HQ GSNNPLG++  +DKI F+P+F  KD  
Sbjct: 178 DNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLV 237

Query: 184 XXXXXXXXXXXXXXINPYLLGDPDNFTPANPLVTPVQXQPE*DF*FADAXLRASPKK*GG 5
                           P +LG PDN+ PANP+ TP    PE  F    A LR+ P K GG
Sbjct: 238 GWVAFAIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPIHAILRSIPDKAGG 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,958,552
Number of Sequences: 28952
Number of extensions: 171087
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)