Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1128
(677 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16770.2 68418.m01964 myb family transcription factor (MYB9) ... 30 1.6
At5g16770.1 68418.m01963 myb family transcription factor (MYB9) ... 30 1.6
At1g76965.1 68414.m08961 glycine-rich protein 29 2.1
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 3.7
At5g42370.1 68418.m05159 expressed protein 29 3.7
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 4.9
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 28 6.5
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea... 28 6.5
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro... 28 6.5
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro... 28 6.5
At1g16720.1 68414.m02005 expressed protein 28 6.5
At5g22390.1 68418.m02612 expressed protein 27 8.6
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 27 8.6
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 27 8.6
At2g40490.1 68415.m04997 uroporphyrinogen decarboxylase, putativ... 27 8.6
>At5g16770.2 68418.m01964 myb family transcription factor (MYB9)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 336
Score = 29.9 bits (64), Expect = 1.6
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = -1
Query: 500 Y*NTNSLNRILRTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLE 321
Y NT+ ++L+ ID HRP +T H VL A P L +L+
Sbjct: 107 YWNTHLRKKLLQMGIDPVTHRP-----RTDHLNVLAALPQLIAAANFNSLLNLNQNVQLD 161
Query: 320 ALHL--GDLLRIWVRTGATSPRTSSPEFSRS 234
A L LL ++ +T+ T++P FS S
Sbjct: 162 ATTLAKAQLLHTMIQVLSTNNNTTNPSFSSS 192
>At5g16770.1 68418.m01963 myb family transcription factor (MYB9)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 336
Score = 29.9 bits (64), Expect = 1.6
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = -1
Query: 500 Y*NTNSLNRILRTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLE 321
Y NT+ ++L+ ID HRP +T H VL A P L +L+
Sbjct: 107 YWNTHLRKKLLQMGIDPVTHRP-----RTDHLNVLAALPQLIAAANFNSLLNLNQNVQLD 161
Query: 320 ALHL--GDLLRIWVRTGATSPRTSSPEFSRS 234
A L LL ++ +T+ T++P FS S
Sbjct: 162 ATTLAKAQLLHTMIQVLSTNNNTTNPSFSSS 192
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 448 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 353
PG + FP KP+ P P +P+L + F D
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 235 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 101
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 174 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 64
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 230 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 132
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = -1
Query: 236 SAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFK 57
S S PP R SS + S F T+++ Q++ FP + AA HF T + K
Sbjct: 10 SMGSSLAPPSNRLSSFVS--ISSSSFGRTQSIAQRKARFPKIYAAKQLHFN-KDGTAIKK 66
Query: 56 AEGTIIETVPLPGSGIG 6
+ + + L G +G
Sbjct: 67 LQAGVNKLADLVGVTLG 83
>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to guanine nucleotide-binding protein beta 5
(GI:1001939) [Mesocricetus auratus]
Length = 425
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 211 GGVRILSADLENSGEDVRGDVAPVRTH 291
GG+++ S + ++S +R DV+P RTH
Sbjct: 12 GGLKVESGEQKSSWPTMRFDVSPYRTH 38
>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 457 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 338
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 457 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 338
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At1g16720.1 68414.m02005 expressed protein
Length = 598
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -2
Query: 475 EYYARTSTRPGTGRIRFP---SKPDTPRSS--EPILIPKLRIQF 359
+Y+AR ST+ G R+R P +P P +P L+ L I+F
Sbjct: 387 QYFARISTKAGFCRVRVPFSAFRPVNPEDPPLDPFLVHTLTIRF 430
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 109 ERSGKSFLFCLSVRVPWNPIEG 174
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 37 SIIVPSALKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 168
S++ +L TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 28 GTVSIIVPSALKTSVRRGNPKWPEDA 105
G ++VP A++ +R G KW E+A
Sbjct: 81 GEKEVVVPKAIQLHLRHGWKKWQEEA 106
>At2g40490.1 68415.m04997 uroporphyrinogen decarboxylase, putative /
UPD, putative similar to uroporphyrinogen decarboxylase
(chloroplast) from Nicotiana tabacum [SP|Q42967],
Hordeum vulgare [SP|Q42855], Zea mays [SP|O81220];
contains Pfam domain uroporphyrinogen decarboxylase
(URO-D) PF01208
Length = 394
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 584 LRPSADLPSRKSCRFVSCAI-GTILYDRR 667
+ P L S KSCR V C++ GT + +R+
Sbjct: 19 ISPRKSLSSTKSCRIVRCSVEGTTVTERK 47
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,810,300
Number of Sequences: 28952
Number of extensions: 350691
Number of successful extensions: 1065
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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