Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0014
(389 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like tra... 30 0.67
AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-lik... 30 0.67
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 29 1.2
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 29 1.2
AC024817-40|AAF59577.4| 967|Caenorhabditis elegans Hypothetical... 27 3.6
AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical ... 27 3.6
AF047662-7|AAC04439.1| 955|Caenorhabditis elegans Hypothetical ... 27 4.7
U88167-2|AAB42225.3| 908|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr... 26 8.2
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p... 26 8.2
AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical... 26 8.2
>AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like
transcription factorELT-6 protein.
Length = 367
Score = 29.9 bits (64), Expect = 0.67
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = +2
Query: 113 GKIIVLLPDNKRSKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRRHQNQRQS 283
G++ L+ + ++ +EQM E + PS +++ +P S GKS+ R+ + ++S
Sbjct: 61 GRLEALISEKEKVLLEQMSESGSEEKYPPSPTESRASPSSVGKSNGGCRKRKPTKES 117
>AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-like
transcription factorfamily protein 6 protein.
Length = 367
Score = 29.9 bits (64), Expect = 0.67
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = +2
Query: 113 GKIIVLLPDNKRSKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRRHQNQRQS 283
G++ L+ + ++ +EQM E + PS +++ +P S GKS+ R+ + ++S
Sbjct: 61 GRLEALISEKEKVLLEQMSESGSEEKYPPSPTESRASPSSVGKSNGGCRKRKPTKES 117
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 29.1 bits (62), Expect = 1.2
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 26 ISEFLTKSRHDVFLEARSHFGVKR-CWTTDGKIIVLLPDNKRSKIEQMFELQHLKTKFPS 202
+ EFL + R L+ + ++ C I +L DN++ K E MFELQ +K +
Sbjct: 1303 LREFLNQHRSP--LQRKCLLAIRMICIEHKNDIDEILQDNRQLKDEMMFELQRVKQRTEE 1360
Query: 203 AQK 211
A +
Sbjct: 1361 ANR 1363
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 29.1 bits (62), Expect = 1.2
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 26 ISEFLTKSRHDVFLEARSHFGVKR-CWTTDGKIIVLLPDNKRSKIEQMFELQHLKTKFPS 202
+ EFL + R L+ + ++ C I +L DN++ K E MFELQ +K +
Sbjct: 1303 LREFLNQHRSP--LQRKCLLAIRMICIEHKNDIDEILQDNRQLKDEMMFELQRVKQRTEE 1360
Query: 203 AQK 211
A +
Sbjct: 1361 ANR 1363
>AC024817-40|AAF59577.4| 967|Caenorhabditis elegans Hypothetical
protein Y54G2A.21 protein.
Length = 967
Score = 27.5 bits (58), Expect = 3.6
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -2
Query: 187 FQMLKFKHL-FNLTAFIIREKDDYF-PICCPAALNAEMRAGLQKDIMT*FGQKF*ND 23
FQ HL LT ++ E + F P CP L + G IM+ G KF ND
Sbjct: 683 FQSFCGNHLKLLLTPAVVEETFNIFGPNLCPMLLGLKSAMGKLSTIMSLSGNKFLND 739
>AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical
protein Y48G1BM.5 protein.
Length = 994
Score = 27.5 bits (58), Expect = 3.6
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -2
Query: 187 FQMLKFKHL-FNLTAFIIREKDDYF-PICCPAALNAEMRAGLQKDIMT*FGQKF*ND 23
FQ HL LT ++ E + F P CP L + G IM+ G KF ND
Sbjct: 159 FQSFCGNHLKLLLTPAVVEETFNIFGPNLCPMLLGLKSAMGKLSTIMSLSGNKFLND 215
>AF047662-7|AAC04439.1| 955|Caenorhabditis elegans Hypothetical
protein T22B2.1 protein.
Length = 955
Score = 27.1 bits (57), Expect = 4.7
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 155 IEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRRHQNQRQSEKSARGRLVESS 319
IEQ E+ HLK + S Q + S KS E + +++S + RL+E +
Sbjct: 716 IEQKDEILHLKAQNQSQQTVIAQQEKSIKSLKEKSQQLEEKRSITNNTQRLLEET 770
>U88167-2|AAB42225.3| 908|Caenorhabditis elegans Hypothetical
protein D2092.5 protein.
Length = 908
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 200 SAQKAQGAPQSSGKSHDEPRRHQNQRQ 280
++QK Q QS+GKSH + HQN Q
Sbjct: 468 NSQKQQ--KQSNGKSHHQHSSHQNNHQ 492
>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 84 SALSAAGQQMGK*SSFSRIINAVRLNRCLNFSI*KPS 194
SA SA Q + SS SR++NA+ L + L KP+
Sbjct: 31 SAYSALQQTVENFSSLSRLVNAISLQQALLDGSAKPN 67
>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 84 SALSAAGQQMGK*SSFSRIINAVRLNRCLNFSI*KPS 194
SA SA Q + SS SR++NA+ L + L KP+
Sbjct: 31 SAYSALQQTVENFSSLSRLVNAISLQQALLDGSAKPN 67
>AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical
protein Y54G2A.13 protein.
Length = 610
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 191 KFPSAQKAQGAPQSSGKSHDEPRRHQNQRQSEKSARGRLVESSMAVS*T 337
K P+A K Q AP+ K + + + Q++K E S A S T
Sbjct: 401 KKPAAPKTQAAPKPGAKLRETQAAQKKEVQTKKKYPSEKSEKSEATSPT 449
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,578,279
Number of Sequences: 27780
Number of extensions: 164639
Number of successful extensions: 528
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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