Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32163
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39)          30   1.3  
SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3)                   29   1.7  
SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)                   28   4.0  
SB_10821| Best HMM Match : TFIIB (HMM E-Value=0.35)                    28   4.0  
SB_7700| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.045)          28   4.0  
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)                27   9.2  
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)                   27   9.2  

>SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39)
          Length = 1607

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 132 KRTHSVLMTRESAQLKETTSRNGSQKACRHRAGSALKSRSI*WPSSSTP--SRIRCLTNS 305
           +R H+VL+T+  AQ KE   ++  +K C +   +A  + +        P   R+  L ++
Sbjct: 557 ERIHNVLLTKTEAQKKEALVKHTEKKVCPYHNNAASHNLTECKRFKELPYEERLEFLKSN 616

Query: 306 ISCANCT 326
             C  CT
Sbjct: 617 GLCFKCT 623


>SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3)
          Length = 374

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 132 KRTHSVLMTRESAQLKETTSRNGSQKACRHRAGSA 236
           +R H+VL+T+  AQ KE   ++  +K C +   +A
Sbjct: 86  ERIHNVLLTKTEAQKKEALVKHTEKKVCPYHNNAA 120


>SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)
          Length = 671

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +2

Query: 152 NDKGKCTAEGNDFKKWIPESLQTSCGKCSEKQKYLVAKFVHAIKDKMPDEFDI---LRKL 322
           N       EG+ F +++   +  +CGKC   ++ ++      I+   P ++D+   +RK 
Sbjct: 537 NTTAPALPEGS-FPRFLNTFIAHACGKCHNHRETVIEYITSNIQSHQPSQYDVRKSIRKF 595

Query: 323 HDPKGEYTE 349
            D     TE
Sbjct: 596 ADLSFPLTE 604


>SB_10821| Best HMM Match : TFIIB (HMM E-Value=0.35)
          Length = 473

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 56  NDDLFYDKKYDNFN-VDEIIDNPRLLKAYTFCFNDKGKCTAEGNDFKKWIPESLQTSCGK 232
           N D + D +Y +F+ V  +I    ++   T       +C     D K+W  ++  TSC +
Sbjct: 87  NADYYEDSEYKSFDPVGFVIGAVTIVVGVTAMLVSMPRC-----DEKRWSQKNGVTSCLE 141

Query: 233 CSEKQKYLVA 262
           C E+ + ++A
Sbjct: 142 CGEQMQRVIA 151


>SB_7700| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.045)
          Length = 377

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 132 KRTHSVLMTRESAQLKETTSRNGSQKAC 215
           +R H+VL+T+  AQ KE   ++  +K C
Sbjct: 347 ERIHNVLLTKTEAQKKEALVKHTEKKVC 374


>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +3

Query: 189 SRNGSQKACRHRAGSALKSRSI*WPSSSTPSRIRCLTNSISCANCTIPKGNTPRTLINS 365
           SRN S+ A R ++ S  +SRS     S + S+    + S+S +      G+  RT  +S
Sbjct: 229 SRNSSRSASRSQSHSVSRSRSKSLSQSRSRSQSHSASRSVSRSRSRSRSGSRSRTRSHS 287


>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
          Length = 411

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 71  YDKKYDNFNVDEIIDNPRLLKAY 139
           Y ++Y+ +  +E + +PRLLKAY
Sbjct: 49  YSQRYNTWEPEENVLDPRLLKAY 71


>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
          Length = 553

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/90 (21%), Positives = 38/90 (42%)
 Frame = +2

Query: 71  YDKKYDNFNVDEIIDNPRLLKAYTFCFNDKGKCTAEGNDFKKWIPESLQTSCGKCSEKQK 250
           Y+K  +     E +    LL+      N+K        +  +  P+  +    +  E QK
Sbjct: 188 YEKVLEELKRKESVMESELLRQKASLENEKEDLERSLKELLEKSPKEKEEMLSEELETQK 247

Query: 251 YLVAKFVHAIKDKMPDEFDILRKLHDPKGE 340
            L+ K  H +++K+ +E +   +L D + E
Sbjct: 248 ELLIKEKHKVEEKLQNELNQKLELKDKELE 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,240,175
Number of Sequences: 59808
Number of extensions: 297581
Number of successful extensions: 847
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)