Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32138
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57869| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   8e-10
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      30   1.3  
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)                28   5.3  

>SB_57869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 33/106 (31%), Positives = 56/106 (52%)
 Frame = +1

Query: 178 RNTFLEWNLEAELYAFGKRLNEEFDSDLLLQAFTDRTYIIKEEMKQKEMGVDIPMKDNME 357
           +  F+  N E EL+AF  RL+  F+ + LL+A        ++ +K KE      +++N +
Sbjct: 76  KREFMRENYEKELFAFRNRLSLVFEDERLLRAALTHELCEEDLVKDKEK-----IEENSK 130

Query: 358 LIAEGEKFINEYVQLYLETVLPKFPLEGVNEVRNYLTNEDRLAKIS 495
           L   G    ++Y+  YL    P  P EGV ++ N+LTN + L K++
Sbjct: 131 LALLGHNLTSQYITEYLCFKYPNLPSEGVRQLHNFLTNRETLVKVA 176


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 190 LEWNLEAELYAFGKRLNEEFDSDLLLQAFTDRTYIIKEEMKQKEMGVD-IPMKDNMELIA 366
           LE   +A   A G    EEF+SD+L  + T    I   +  +++ G+D  P +++ +L  
Sbjct: 286 LEEEKDAMSEATGANTKEEFESDILPNSETSTLAIETRKDLERDSGIDENPFRESDKLSD 345

Query: 367 EGEKF 381
            G+++
Sbjct: 346 NGQEY 350


>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
          Length = 815

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
 Frame = +1

Query: 289 YIIK-EEMKQKEMGVDIPMKD-NMELIAEGEK---FINEYVQLYLETVLPKFPLEGVNEV 453
           +II+  E  Q E+G    +KD + E++++G     +++ Y++ Y+E V  K P  G+ ++
Sbjct: 720 HIIRLREHAQSELGDMFNLKDFHFEILSQGTSPLSYLDAYIRNYVECVKNKMPSCGMKDL 779


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,225,268
Number of Sequences: 59808
Number of extensions: 216486
Number of successful extensions: 424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)