Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32138
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15417.1 68417.m02358 ribonuclease III family protein similar...    28   3.2  
At3g06550.1 68416.m00761 O-acetyltransferase-related similar to ...    27   5.7  
At1g49130.1 68414.m05508 zinc finger (B-box type) family protein...    27   5.7  
At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam...    27   7.5  

>At4g15417.1 68417.m02358 ribonuclease III family protein similar to
           CAF protein (RNA helicase/RNAseIII) [Arabidopsis
           thaliana] GI:6102610; contains Pfam profile PF00636
           RNase3 domain
          Length = 213

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 211 ELYAFGKRLNEEF-DSDLLLQAFTDRTYI 294
           E+ +  K LN +F D  LLL+AFTD +Y+
Sbjct: 28  EIESLEKILNYKFKDKSLLLKAFTDASYV 56


>At3g06550.1 68416.m00761 O-acetyltransferase-related similar to
           O-acetyltransferase (GI:17063556) [Cryptococcus
           neoformans var. neoformans]; contains 7 transmembrane
           domains
          Length = 419

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 164 RKQIPVTLFWNGIWRLNFMLLENV*MKNSTRICYY 268
           RK   +  F   +WRLNF+++ +  + N++ + YY
Sbjct: 226 RKDFSLARFAQMMWRLNFLVIFSCIVLNNSYMLYY 260


>At1g49130.1 68414.m05508 zinc finger (B-box type) family protein
           contains similarity to zinc finger protein GI:3618318
           from [Oryza sativa]
          Length = 326

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 282 QNLYYKGRNETKRNGSRYSYEGQYGVDCRR 371
           ++LYY G  E K +G+  +  GQY + C++
Sbjct: 182 EDLYYNGEEEDKTDGAE-ACPGQYLMSCKK 210


>At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam
           NUDIX domain [PF00293]; very low similarity to Chain A
           and Chain B of Escherichia coli isopentenyl
           diphosphate:dimethylallyl diphosphate isomerase
           [gi:15826361] [gi:15826360]
          Length = 772

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
 Frame = +1

Query: 280 DRTYIIKEEMKQKEMGVDIPMKDNMELI--------AEGEKFIN-EYVQLYLETVLPKFP 432
           D + +  +   ++E+GV +P KD  E I            KFIN E+  +YL T+L   P
Sbjct: 75  DTSLLSAQRELEEELGVKLP-KDAFEKIFVFLQECVTNDGKFINNEFNDVYLVTILHPIP 133

Query: 433 LE 438
           LE
Sbjct: 134 LE 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,525,449
Number of Sequences: 28952
Number of extensions: 162727
Number of successful extensions: 382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)