Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32128
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g12290.1 68418.m01445 expressed protein similarity to NCA2 pr... 30 1.1
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 29 1.9
At2g44980.2 68415.m05601 transcription regulatory protein SNF2, ... 28 3.2
At2g44980.1 68415.m05600 transcription regulatory protein SNF2, ... 28 3.2
At1g43680.1 68414.m05018 hypothetical protein 28 4.3
At5g36210.1 68418.m04365 expressed protein 27 7.5
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 27 7.5
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 27 7.5
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH... 27 9.9
At2g37000.1 68415.m04538 TCP family transcription factor, putati... 27 9.9
At2g32160.2 68415.m03931 expressed protein 27 9.9
At2g32160.1 68415.m03930 expressed protein 27 9.9
>At5g12290.1 68418.m01445 expressed protein similarity to NCA2
protein, yeast, PIR:S54389~Contains 'Homeobox' domain
signature and profile AA305-328
Length = 602
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 102 FRLWVLKHGQLMTSSEVSAGWSHSASSLICS 194
F +W+L+H LM SS++ W H A S
Sbjct: 315 FSIWLLRHSSLMGSSDIE-NWVHDAKEATMS 344
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 197 LVW-YPHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYSCSENKTREF 373
+VW YP L HS +++ GQT G D ++FW +F S+++ E
Sbjct: 405 IVWKYPTMSKLATLTGHSYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQSRESEI 464
Query: 374 FVLLY 388
L +
Sbjct: 465 GALSF 469
>At2g44980.2 68415.m05601 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 870
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 414 IAFNNSSQASKWFTIISCLHEYLYYHSVKLFI 509
I + + S S+W+T+ L +Y +VK+F+
Sbjct: 839 IGYQDGSDRSQWYTVERLLRKYSSIFTVKIFV 870
>At2g44980.1 68415.m05600 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 851
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 414 IAFNNSSQASKWFTIISCLHEYLYYHSVKLFI 509
I + + S S+W+T+ L +Y +VK+F+
Sbjct: 820 IGYQDGSDRSQWYTVERLLRKYSSIFTVKIFV 851
>At1g43680.1 68414.m05018 hypothetical protein
Length = 247
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 411 NLFINWIKYNNTKNSRV-LFS-LHEYPKITQN*IRASNFPH 295
N W + N++NS + +S LH++P ++ N A N PH
Sbjct: 135 NSLNRWDQEINSQNSNISTYSPLHDFPVVSWNFYTAGNLPH 175
>At5g36210.1 68418.m04365 expressed protein
Length = 676
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +2
Query: 194 YLVWYPHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYS 346
Y +YP + L PP+ + + G G L+ IQ+W G++
Sbjct: 419 YAYFYPPTNPLYNASMEEKPPLLVKSHGGPTAESRGSLNLNIQYWTSRGWA 469
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 197 LVW-YPHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIF 337
++W YP + HS +++ T GQT G D ++FW +F
Sbjct: 411 MLWKYPSMSKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLRFWNVF 458
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 197 LVW-YPHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYSCSENKTRE 370
+VW YP + H+ +++ GQT G D ++FW +F S+N E
Sbjct: 448 IVWKYPTMSKIATLTGHTYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSE 506
>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
(MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
thaliana}
Length = 1324
Score = 26.6 bits (56), Expect = 9.9
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 127 VNS*PALKFRLVGRIQHPASSALPRMVPTLCHTGR-GPLSLRASGFYIYIRSRA 285
+N P+ + G+I SS LP+M+ L + G L+L A G IY +A
Sbjct: 614 INCQPSSAYSSEGKILGDGSSFLPKMLSELATEDKNGSLALSALGGAIYYLRQA 667
>At2g37000.1 68415.m04538 TCP family transcription factor, putative
similar to TFPD (GI:6681577) [Arabidopsis thaliana]
Length = 188
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 78 PALREEQPFRLWVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSHWARAA 239
PAL + F+L + G + S + S+I +T YGT +S+W A
Sbjct: 60 PALAAARIFQL-TRELGHKTEGETIEWLLSQAEPSIIAATGYGTKLISNWVDVA 112
>At2g32160.2 68415.m03931 expressed protein
Length = 449
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 408 DFI-AFNNSSQASKWFTIISC 467
DF+ FN SSQA W +++C
Sbjct: 325 DFVEVFNESSQAGMWDAVVTC 345
>At2g32160.1 68415.m03930 expressed protein
Length = 415
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 408 DFI-AFNNSSQASKWFTIISC 467
DF+ FN SSQA W +++C
Sbjct: 325 DFVEVFNESSQAGMWDAVVTC 345
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,353,430
Number of Sequences: 28952
Number of extensions: 264270
Number of successful extensions: 643
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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