Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32093
         (309 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32)                   29   0.77 
SB_27229| Best HMM Match : 7tm_1 (HMM E-Value=0.0014)                  29   0.77 
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   27   3.1  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           27   4.1  
SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                27   4.1  
SB_21608| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_51110| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_33968| Best HMM Match : Transformer (HMM E-Value=5.1)               26   7.2  
SB_20797| Best HMM Match : SoxE (HMM E-Value=0.046)                    25   9.5  
SB_2791| Best HMM Match : MAM (HMM E-Value=0.057)                      25   9.5  

>SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32)
          Length = 524

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 83  QPPLLLCWFRVSYCKN*KMALRDGLAN 3
           QPP +LC F +S C   + A+ D  AN
Sbjct: 115 QPPTVLCHFHLSSCLTGQTAMNDSKAN 141


>SB_27229| Best HMM Match : 7tm_1 (HMM E-Value=0.0014)
          Length = 309

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 83  QPPLLLCWFRVSYCKN*KMALRDGLAN 3
           QPP +LC F +S C   + A+ D  AN
Sbjct: 107 QPPTVLCHFHLSSCLTGQTAMNDSKAN 133


>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 86  EAKKAKQAEIDRKRAEVRKRMEE 154
           E K+ + AE+++KR E R+R EE
Sbjct: 230 ERKEKELAELEKKRQEERRRQEE 252


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 80  VDEAKKAKQAEIDRKRAEVRKRME 151
           ++EAKK +Q E +RK  E ++R+E
Sbjct: 757 MEEAKKREQEEKERKEKEEKERIE 780


>SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 280

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 24  GHLLILAVGHPKPTQQQWRLMKRRRPNRPKST 119
           GH+L +       T   W  + +R+P RPK+T
Sbjct: 204 GHVLRMGQERIPKTSALWTPIGKRKPGRPKTT 235


>SB_21608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 24  GHLLILAVGHPKPTQQQWRLMKRRRPNRPKST 119
           GH+L +       T   W  + +R+P RPK+T
Sbjct: 51  GHVLRMGQERIPKTSALWTPIGKRKPGRPKTT 82


>SB_51110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 77  AVDEAKKAKQAEIDRKRAEVRKRMEEAS 160
           AVD  +K K  E+DR R +  ++  E S
Sbjct: 40  AVDAMRKQKDEELDRYRRQAERKAREMS 67


>SB_33968| Best HMM Match : Transformer (HMM E-Value=5.1)
          Length = 471

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 51  HPKPTQQQWRLMKRRRPNRPKSTASALRC 137
           HP   ++   L +R  P  P+S  SA +C
Sbjct: 184 HPTTDREDGTLAERHAPQAPRSVFSAKKC 212


>SB_20797| Best HMM Match : SoxE (HMM E-Value=0.046)
          Length = 641

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +3

Query: 30  LLILAVGHPKPTQQQWRLMKRRRPNRPKST 119
           ++++ V   +  QQ+ +++KR+R  RPK+T
Sbjct: 378 VVVVVVVVNREYQQRMQVVKRKRKKRPKTT 407


>SB_2791| Best HMM Match : MAM (HMM E-Value=0.057)
          Length = 398

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 70  CCVGLGCPTARI 35
           CC+G+ CPT R+
Sbjct: 202 CCIGIYCPTCRM 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,935,589
Number of Sequences: 59808
Number of extensions: 69135
Number of successful extensions: 261
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)